FastQCFastQC Report
Tue 10 May 2022
EGAF00003647739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1302785
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG34210.26259129480305654No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG29800.2287407361920808No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA25400.19496693621741118No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCAC23490.18030603668295228No Hit
GTGTGTACGCGCTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTT22570.1732442421427941No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG21930.1683316894192058No Hit
CTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT20860.16011851533445656No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG16330.12534685308780805No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC16180.12419547354321703No Hit
TTCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTA15640.12005050718268939No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC14860.11406333355081615No Hit
CCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCG13440.10316360719535456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)