FastQCFastQC Report
Tue 10 May 2022
EGAF00003647740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1302785
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG34910.26796439934448124No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG28130.21592204392896758No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA23930.18368341668041924No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCAC23040.17685189804917925No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG22600.1734745180517123No Hit
GTGTGTACGCGCTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTT21330.16372617124084174No Hit
CTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT20270.1555897557923986No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC17330.13302271671841479No Hit
TTCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTA16290.12503981854258378No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG15480.11882236900179231No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC14630.11229788491577658No Hit
CCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCG14010.1075388494648004No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC13660.10485229719408805No Hit
CAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCT13250.10170519310553928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)