FastQCFastQC Report
Tue 10 May 2022
EGAF00003647741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1317777
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG36420.27637453074382085No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG29370.22287534233789177No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA24450.18553973851417957No Hit
GTGTGTACGCGCTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTT23910.18144192833840628No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCAC22630.17172860051435104No Hit
CTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT21900.16618896823969456No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG21620.1640641777781825No Hit
TTCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTA17230.13075049875661815No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC17070.12953633277861126No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC15620.11853295360292372No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG15550.1180017559875457No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC14360.10897139652611937No Hit
CCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCG13950.10586009620747669No Hit
TACTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGTCCTGTTCA13680.10381119111959004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)