FastQCFastQC Report
Tue 10 May 2022
EGAF00003647742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1317777
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG34890.2647640685791298No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG30190.22909794297517713No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTA24420.18531208239330327No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG22990.1744604739648666No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCAC22590.17142505901984934No Hit
GTGTGTACGCGCTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTT21640.16421594852543336No Hit
CTTCAGGGTCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT21070.15989048222878377No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC17100.12976398889948754No Hit
TTCCAGTACACTTACCATGTTACGACTTGTCTCCTCTATATAAATGCGTA16220.1230860760204496No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG14910.11314509207551808No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC14790.1122344675920129No Hit
CCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCG14200.10775723054811247No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC14030.10646717919648013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)