FastQCFastQC Report
Tue 10 May 2022
EGAF00003647783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32428
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1610.4964845195510053No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT990.30529172320217096No Hit
GTGCAGGGCAAGGCGATCCTCGAGCGCTTCGTGCTTGGCATCTGCGGCGC730.22511409892685333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT720.2220303441470334No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC490.15110398421117555No Hit
CTTCTATCTTCTCCAAATTGTTTCATCCTACCACTCCCAATTAATCTTTC400.12335019119279633No Hit
CAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGC390.12026643641297644No Hit
ATCCAGGATGGACTGGCGCATCGAGCGCGTGCTGTCGGCCATCCGGGCTT370.11409892685333661No Hit
GTATAGAGCATTGCCCTGGGTCTGGTGAAGAAGGAAGGGCACGTGGGTCT370.11409892685333661No Hit
ATTATACACATACCTCTGTATCAGGTATGAATTTTAAAAGAATCACCAAC370.11409892685333661No Hit
ACTTTATGTAGATGCCATGTCTGACTACAGAAGACTGTTTCTGAAATCTT360.1110151720735167No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT350.10793141729369679No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT340.1048476625138769No Hit
ATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAA330.10176390773405698No Hit
GTACGTGACGGTCTCGCCTGCCGGCACCGTCACCTTCCGGTACGACTACC330.10176390773405698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)