FastQCFastQC Report
Tue 10 May 2022
EGAF00003647784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32428
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1310.40397187615640806No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1240.3823855926976687No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT640.19736030590847414No Hit
GTGCAGGGCAAGGCGATCCTCGAGCGCTTCGTGCTTGGCATCTGCGGCGC600.18502528678919453No Hit
TCCTTGAACAGGTCGCGCAGCGGCTCCAGCAGCTTGAGGCCGAGCTGCTC500.15418773899099544No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC470.14493647465153572No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT410.12643394597261626No Hit
CCTCTGTATCAGGTATGAATTTTAAAAGAATCACCAACTTGGATGAGCAA410.12643394597261626No Hit
GTATAGAGCATTGCCCTGGGTCTGGTGAAGAAGGAAGGGCACGTGGGTCT390.12026643641297644No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT380.11718268163315652No Hit
GTTCAAGGACGAAGTGCGCGAACTGGGCGTGGCCCTGGGCCTGCCGCCGG380.11718268163315652No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA370.11409892685333661No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA340.1048476625138769No Hit
GTCATGGAGATGTTCGAGGGCAAGCTGCACGCGAAGGTGATCCGCGTCGA330.10176390773405698No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT330.10176390773405698No Hit
ATTATACACATACCTCTGTATCAGGTATGAATTTTAAAAGAATCACCAAC330.10176390773405698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)