FastQCFastQC Report
Tue 10 May 2022
EGAF00003647785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31958
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1490.4662369359784717No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1120.35045997872207274No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT860.2691031979473058No Hit
GTGCAGGGCAAGGCGATCCTCGAGCGCTTCGTGCTTGGCATCTGCGGCGC760.23781212841854932No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC410.1282933850679016No Hit
GTATAGAGCATTGCCCTGGGTCTGGTGAAGAAGGAAGGGCACGTGGGTCT400.12516427811502598No Hit
ATTATACACATACCTCTGTATCAGGTATGAATTTTAAAAGAATCACCAAC400.12516427811502598No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT350.10951874335064773No Hit
GTACATGGGCAGTGCATGGCGAGTTGACTTTGTATGCACAAGGCAAAATC340.10638963639777207No Hit
ACATTATTGAGGGTAATCTCCCATATTTCAAGCCAGTTGGTTATAGATGC340.10638963639777207No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT320.10013142249202078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)