FastQCFastQC Report
Tue 10 May 2022
EGAF00003647786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31958
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1350.4224294386382127No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1250.3911383691094562No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT880.2753614118530571No Hit
GTGCAGGGCAAGGCGATCCTCGAGCGCTTCGTGCTTGGCATCTGCGGCGC840.26284498404155454No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC640.20026284498404157No Hit
GTATAGAGCATTGCCCTGGGTCTGGTGAAGAAGGAAGGGCACGTGGGTCT510.1595844545966581No Hit
ATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAA460.14393891983227985No Hit
CTGCTACCTCCGCCTCCCGGGTTGAAGCAATTCTCCTGCCTCAGCATTCC420.13142249202077727No Hit
AATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACT390.12203517116215032No Hit
ATTATACACATACCTCTGTATCAGGTATGAATTTTAAAAGAATCACCAAC390.12203517116215032No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.11577695725639903No Hit
CAATAATGTGGGTGGGCCTCGCGCAATGAGTTGGGAGGTCTTAAGAGCAA370.11577695725639903No Hit
GTTCAAGGACGAAGTGCGCGAACTGGGCGTGGCCCTGGGCCTGCCGCCGG360.11264785030352337No Hit
CAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGC350.10951874335064773No Hit
TCCATGCAGCGCTCGCGCGCCTTGGCCAGCGTCAAGCCATCCTGGCCGTA320.10013142249202078No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT320.10013142249202078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)