FastQCFastQC Report
Tue 10 May 2022
EGAF00003647793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003647793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9920
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG140.1411290322580645No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT130.13104838709677422No Hit
CCTCCATGATGCTGCTTACATGTCTCGATCCCACTTAACTATCTTGGGCT120.12096774193548387No Hit
ATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAG120.12096774193548387No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG110.11088709677419355No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC100.10080645161290322No Hit
CCCTTAGACCATGCTCAGCCTCCAAGCAGCCTTGTCATCGACAAAGAATC100.10080645161290322No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG100.10080645161290322No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATC100.10080645161290322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)