FastQCFastQC Report
Tue 10 May 2022
EGAF00003648015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences946338
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT16590.17530734261965597No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC11460.12109838133943687No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC11210.11845661909381214No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT11010.11634320929731239No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA9940.1050364668860386No Hit
ACTCAACACTGAGCAGATCTGTTCTTTGAGCTAAAAACCATGTGCTGTAC9720.10271171610988884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)