FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length146
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTTATTGCTCCTGTACGAACCCCTCCCCTCCCCCCTGTAAACACAGTG38.571428571428571No Hit
AAACAGCGCCGCGCACAGAAAAGGAAACTTCATTCCGTCTGTTAAGGGCA25.714285714285714No Hit
GAAGCAGACGGCACAGGGACACCCCTGCCACCTTGGGATCTGCCTCCAAG25.714285714285714No Hit
GTCGGTGTCCGAGCTTAGCCTTGGACCCACCAAGGCTGTGACTTCCTGGC25.714285714285714No Hit
AAGGGAAGAGAGTGGCTCAGCCTGCAGGTAAATAGGCTAGAAAAGCCAAG25.714285714285714No Hit
CTGGTGTGATCCCCTGGGCCCGTTTGTTGTCGGGGGAGAAGACTTAGACC12.857142857142857No Hit
GAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGAC12.857142857142857No Hit
CTTCCATTCCAGGGGCATCCACATGAACCCGCACAAAGTTCTGAATGATT12.857142857142857No Hit
CCTCCCGTGAGGGCCACACGCGCCTTGGCCGGGCCCGGGGCCACGCAGGT12.857142857142857No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT12.857142857142857No Hit
CTCCTGCTCTATCCACGGCGCCCGCGGCTCCATCCTCTGGCTCGCGGCGT12.857142857142857No Hit
GGTCTGCTGGCCGAAGCCCACCAAGAGTCCATTGATCTCGTGCCACAGCT12.857142857142857No Hit
AGTGTATTTTGAGGACGGAGTCTGGGGAAATCAATGGGATGGGGCTAAAA12.857142857142857No Hit
GCACGAAGTGTCTTCCGATGCAGTGTCCAGTCATGACCTCGATCCATCGC12.857142857142857No Hit
GCCCATCACTGACCGCATGCTGAGGGCCACGGGCAAGGCCTATCACCCGC12.857142857142857No Hit
CTGTAATTTTTGCTGATGCTGAAGCCTGTCCTTGGGAATTGGATGCATGG12.857142857142857No Hit
GAGCCATGAGGCAGCTCCCCTACTTCATCCGGCCAGCTGTCCCCAAGAGA12.857142857142857No Hit
TTGCTGATCCACATCTGCTGGAAGGTGGACAGCGAGGCCAGGATGGAGCC12.857142857142857No Hit
GCCCTAGGCACAGCTGGGCCCTTGAGACAGCAGGGCTTCGATGTCAGGCT12.857142857142857No Hit
TTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAG12.857142857142857No Hit
CCACACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGT12.857142857142857No Hit
CTGTGAAGCTCTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACC12.857142857142857No Hit
GAATGTGAGGGGAGTGGGTCCGCTCCACCAGATGCCAGCACCGGGGCCAG12.857142857142857No Hit
ACCCGGCGGAAGCCGCGGTCCATGCGGGGATCCCCAGGCTTATCCAACGC12.857142857142857No Hit
TTACAGCACGGTGCGATGCACACGGTGACCAAACCACGGAGGCAGCTTCT12.857142857142857No Hit
TTGTGCACGAGCCCCTGGTAGATGTCCAGAATGTCTGTTTCCAGGAAAAG12.857142857142857No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACC12.857142857142857No Hit
GCTAACGGAACAAGCTTTGTGCCATTCGGACCTACCGTAAGCCTATATTT12.857142857142857No Hit
GCACTCATATTCTCCAGCATCTTCCTTACTTAGAGGAGATACCAGCACCC12.857142857142857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)