FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT24.761904761904762No Hit
GAGGCACCACGGTCCGGGACTACACCCAGATGAACGAGCTGCAGCGGCGC24.761904761904762No Hit
CCCGTGGTCCACATGGCCGATGGTACCCACATTCACATGTGGCTTGTCGC24.761904761904762No Hit
GTCTTGGAGGGGAAGCGAAATCCTCAGTCTGACACCCGCTCTGCCTATGG24.761904761904762No Hit
TCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGA12.380952380952381No Hit
GTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACCTCAGGGT12.380952380952381No Hit
ATGCCTGCCTGGCAGTGGACAAACACCCTTCCTCCAGCATTCTTGATGGA12.380952380952381No Hit
GTTCACGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCAC12.380952380952381No Hit
GTGTCTGCGGATACTTCCACAGGTCCCACAACCGCAGCGAGGAGTTTCTC12.380952380952381No Hit
GCTGGCTCCCAAATACCACGCTGGCCAAGTCCCCGACCAGGTCTTGGGGG12.380952380952381No Hit
CAACTATACTCCGATCACCAATGTACCTCCAGAGGTAACTGTGCTCACGA12.380952380952381No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA12.380952380952381No Hit
ATCCAGGACAGAGACCCTCAACCACCACAACCTGCTGATCTGCTCGGTGA12.380952380952381No Hit
TCTTTCAGCAATTCATGTGTTTCCTTGGCGAGCTGATTTGTGGAGTGTTG12.380952380952381No Hit
TGTCTGTTACGAGCTACCGATGGGAAGAAGAAGATCAGCACTGTTGTGAG12.380952380952381No Hit
GCCTTGGCCGGGCCCGGGGCCACGCAGGTGGTGCACTGCGCGCCCGCCAG12.380952380952381No Hit
GGGTGGGCAGTGGCCTGAGCCCGGCAGCTGGCCCTACAGCTCTCTCTCTT12.380952380952381No Hit
CTGCTTGGGGTCAGCACCGATCTCCTTGGCCACAATGGTCTTGAAGATCA12.380952380952381No Hit
GTCATCAACCATGTCATTAGTGTCGACCCTAACGACCAGAAGAAGACAGC12.380952380952381No Hit
GGACAGAGGCAGTTGGCCTTGTCTTTCTGGTCCTTACATATCTGCTTGGG12.380952380952381No Hit
CCATGGTAGGCACGGCGACTACCATAGAAAGTTGATAGGGCAGACGTTCG12.380952380952381No Hit
GAGGAAGAGGATGCCATGCAGAACTGCACACTCAGTCCCTCTGTGCTCCA12.380952380952381No Hit
AGCCAAGACCCCCAGCGTCTTGGAGGGGAAGCGAAATCCTCAGTCTGACA12.380952380952381No Hit
GTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGC12.380952380952381No Hit
AGATATAGACCTCACGTAGTCATCCAGGCTAGGAGAGGGTGGGGGCTCCT12.380952380952381No Hit
CACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCA12.380952380952381No Hit
GCTCTGACTCACCCCTAGGTCTGTGGGACTAGACCCGGCATAGACGCACC12.380952380952381No Hit
CTGCTTGGGGTCAGCACAGATCTCCTTGGCCACAATGGTCTTGAAGATCA12.380952380952381No Hit
CTCTGAGAATTGGGATACAGGACCCAAAAGGCTGAAAGGGGGCAGTGAAG12.380952380952381No Hit
CCAGACGACCTTCTCATCGCAGGTCGGTGTGGTGAGAGAGCCCAGGTAGC12.380952380952381No Hit
CTCTGAGACAGCAGGACAATGGTCAGTTCAGAGAGGGTGAGGGCAGCAAA12.380952380952381No Hit
GCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTT12.380952380952381No Hit
GCACTTCACCTGAGCCTGCACGTAGTCCCAGGCATCCTGCAGGCTGTCCT12.380952380952381No Hit
CACTGTAGCCGCTTGGCAGGACCATTTTTCTGGTCATCGGGTCCAGCGTG12.380952380952381No Hit
CACAGACGGTGGCCACAGCGGCACCTCGGCCAGAGCCATGCGGCCATCAG12.380952380952381No Hit
GTAGAAGCAGGATGCTCTTGACTCATGTTGAGTGCCACTGAACTCAGGAA12.380952380952381No Hit
GTGTCCGGCGGAGCCAAGTCCACTCTGGGGGAGCTCTGGCGGGGACCACG12.380952380952381No Hit
GTCTCGGCCCTGGCGTCTGGGCTGGTCGAGGAGCCCATGCTGGGCCCGCC12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)