FastQCFastQC Report
Tue 10 May 2022
EGAF00003648443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1184642
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTATAGAGCTCACACCCATACTCCCAGCTGGGACCCAGCCTTCCCTG37150.313596850356479No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT14120.11919212724181652No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA13940.1176726808605469No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12960.10940013945141232No Hit
GAGTATAAGTTGGTCACCTTTGGTGTAAAACTGAGCTTCCGAGCTGGCTT12170.10273145811139567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)