FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2618
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT190.7257448433919022No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC180.6875477463712758No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA170.6493506493506493No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG150.5729564553093965No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA150.5729564553093965No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT150.5729564553093965No Hit
GATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTC140.53475935828877No Hit
GGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT140.53475935828877No Hit
ACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCG110.42016806722689076No Hit
CACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGA100.38197097020626436No Hit
GTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCTCTTCAG90.3437738731856379No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT90.3437738731856379No Hit
CGTGCAACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCC90.3437738731856379No Hit
CGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAG80.30557677616501144No Hit
GCCATAACATGTGCCCACACATCTTCACCTTGGAAATGTAGCATTTCAAG80.30557677616501144No Hit
GTCCGGGTGGGCCTAGCAGTCGCTCCATTTATCGCTTGAGATCTCCAGCC80.30557677616501144No Hit
GCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGC70.267379679144385No Hit
GAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGT70.267379679144385No Hit
GCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGAGGTGCATTTGC70.267379679144385No Hit
CTCACATATTTAACATAAAAAGAAATGCAGCAAATGGCTCAGTATCGTAT70.267379679144385No Hit
CCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCC70.267379679144385No Hit
CCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGAGGTGCATTTGCAC70.267379679144385No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.267379679144385No Hit
TCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCG60.2291825821237586No Hit
GTGCCAAGTGTGCCCAGGGCTGCATCTGCAAAGGGGCGTCGGACAAGTGC60.2291825821237586No Hit
GTACATGGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACC60.2291825821237586No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT60.2291825821237586No Hit
CAGCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACTT60.2291825821237586No Hit
CATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCACTTGTC60.2291825821237586No Hit
GTATCGTATTGAAAAAAAATCCAGGTTGTGCAGCTTGTTCTATTAACATC60.2291825821237586No Hit
CCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGTGGGCTGTGCCAAG50.19098548510313218No Hit
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGT50.19098548510313218No Hit
ATTTCATAGAAAAAGGAATATAGCAAACGGTCAGGGTCAGGGTTGTACAT50.19098548510313218No Hit
GTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGTGG50.19098548510313218No Hit
CTATTAACATCTGGGAGAAGAGCTGTTCCCACATCAGGCACAGCAGCTGC50.19098548510313218No Hit
GCCCTTTTTCCATACAATTTGCATACACCAGACCAGGAGAGAAGGGACTG50.19098548510313218No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTC50.19098548510313218No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT50.19098548510313218No Hit
TCTCCAGCCTTACCGCGGCTCGAAATGGACCCCAACTGCTCCTGCACCAC50.19098548510313218No Hit
CTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCAAATGCA50.19098548510313218No Hit
AACTGGTCCTTTCACTTTGAGATTCTTTTCTTTTGCGCCTCTTATCAAGT50.19098548510313218No Hit
GGTGTCTCCTGCGCCTGCACCGGCTCCTGCAAGTGCAAAGAGTGCAAATG50.19098548510313218No Hit
ATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCTGGGAGCGGGGCTGTCC50.19098548510313218No Hit
TCTGGGAGAAGAGCTGTTCCCACATCAGGCACAGCAGCTGCAGTTCTCCA50.19098548510313218No Hit
CCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCTGTGGGCTGTGCCAAG40.15278838808250572No Hit
GGATCTCACGCTGCAGGGCGCAGGAGTAATCCACAATGAGGCGTTCTGCT40.15278838808250572No Hit
GTACATGGGAGAGCGGACAGGGCGATGGCAGGTTCGCCGGGTGTGAGGCT40.15278838808250572No Hit
GTACATGGGACGCCTCCTCCAAGTCCCAGCAAACCCGCGTGCAACCTGTC40.15278838808250572No Hit
CTCCAACGTCCCTTTGCAGACACAGCCGTGGGCACACTTGGCACAGCCCA40.15278838808250572No Hit
GTCAGGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTT40.15278838808250572No Hit
CCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCTCT40.15278838808250572No Hit
GGGCCTAGCAGTCGCTCCATTTATCGCTTGAGATCTCCAGCCTTACCGCG40.15278838808250572No Hit
AGTCAAAGCTGTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATA40.15278838808250572No Hit
CCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTTCCACAAGTACTCC40.15278838808250572No Hit
GTTACCTGGTGAAGGAGCGGGGCTTGGCTGCAGGAGATGCCATTGCTGAA40.15278838808250572No Hit
ACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAG40.15278838808250572No Hit
GAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCC40.15278838808250572No Hit
CCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCC40.15278838808250572No Hit
AACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTG40.15278838808250572No Hit
AACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAA40.15278838808250572No Hit
CTCCTGCACCACTGGTGTCTCCTGCGCCTGCACCGGCTCCTGCAAGTGCA40.15278838808250572No Hit
GGGCCAGGCTGTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCC40.15278838808250572No Hit
GTATCAACGCAGAGTACATGGGAACACATCCAAGCTTAAGACGGTGAGGT40.15278838808250572No Hit
GTCAGGACCTGGGCCATTGCAACCAAAATGGGGACTTCCTGGGTAGGGAG40.15278838808250572No Hit
AATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGC40.15278838808250572No Hit
CTCCCTCCCGGTCTCACCTTCCCTCGCGGTCAGCATGAAAGCCTTCAGTC40.15278838808250572No Hit
CTGCACAACCTGCTCCGCTTTCTGGCCAGCGACAAGCCCCAGGAGATGGC40.15278838808250572No Hit
AGCAGGAGCAGCAGCTTTTCTTGCAGGAGGTGCATTTGCACTCTTTGCAT40.15278838808250572No Hit
CTCCTGCTTCTCCTTGCCTCGAAATGGACCCCAACTGCTCCTGCTCGCCT40.15278838808250572No Hit
ACTCCACAGATACCCCGAAGCCATGGCAAGCAAGGGCTTGCAGGACCTGA40.15278838808250572No Hit
CGGTCAGGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCG40.15278838808250572No Hit
ATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGTACAT40.15278838808250572No Hit
ACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGC40.15278838808250572No Hit
CACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCTCCTGCA40.15278838808250572No Hit
TTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGA40.15278838808250572No Hit
TCCCAAACCTTACGATCCTCCTGGAGAGAAGATGGTAGCAGCAAAAGTAA40.15278838808250572No Hit
GTTTTATTGTCACTCACATATTTAACATAAAAAGAAATGCAGCAAATGGC40.15278838808250572No Hit
CTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTCC40.15278838808250572No Hit
CAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCA40.15278838808250572No Hit
CCTTATAGCCTCTCAACTTCTTGCTTGGGATCTCCAACCTCACCGCGGCT40.15278838808250572No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.15278838808250572No Hit
GTGGAACCGTGAGCGCAGGCGCCTACAAATCGAGGACTTCGAGGCTCGCA30.1145912910618793No Hit
TCCAGGTTGTGCAGCTTGTTCTATTAACATCTGGGAGAAGAGCTGTTCCC30.1145912910618793No Hit
TCTGATTCCCGAGTGTCTGCAGGCGAGGCGGTGGTGAACCGAGTGTTTGA30.1145912910618793No Hit
GCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACTTGG30.1145912910618793No Hit
TCATAAGGTTTCTCACAGTGCGTTTTTCGATGCCTAAAAAGGCTTGTACT30.1145912910618793No Hit
ATCCCAGAGAAGGTGTCAGAGGCCTGGTTAGCAGTCTTGTCGATGGTTTC30.1145912910618793No Hit
GCAGCTAGAGGCGCTGCTCAACAAGACTATGCGCATTCGCATGACAGATG30.1145912910618793No Hit
GTCGCTCCATTTATCGCTTGAGATCTCCAGCCTTACCGCGGCTCGAAATG30.1145912910618793No Hit
CTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGC30.1145912910618793No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA30.1145912910618793No Hit
CCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGC30.1145912910618793No Hit
CTCCAAGTCCCAGCGAACCCGCGCGCAACCTGTCCCGACTCTAGCCGCCT30.1145912910618793No Hit
TCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACA30.1145912910618793No Hit
GCCCAGCCCAGCCCAGGACCGCTGGCGGTGCGAACCCAGCCGGGCGGGTG30.1145912910618793No Hit
GTACATGGGAGGCTCCAACGTGCCTTCCAGCTGCCTGACTGCCTCTTCGC30.1145912910618793No Hit
CTCCTACACGGAGAAGGACAAGCAGGCGTATCTGGAGGCAGCCTATGCAG30.1145912910618793No Hit
GGTTCACAGTGCAGCTTGTGGCTCGTGTCCATCTTGCAGGTGGCTCTTCC30.1145912910618793No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA30.1145912910618793No Hit
GGTTTATATAGGTTGCTCTATTTACATCTGAGAGCACAGCTGTCCTGGCA30.1145912910618793No Hit
GTCACAGGTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAA30.1145912910618793No Hit
GTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTT30.1145912910618793No Hit
AAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGTGGGCTG30.1145912910618793No Hit
GTTCAGCGACAGCGAGGACCTGGATGGGCACCTAGAGAGCCACGAGGCCC30.1145912910618793No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG30.1145912910618793No Hit
AAGTGAGGGTCCCCGACCCAGGCGAACGGTGGCTCCCATAGGACAATCGC30.1145912910618793No Hit
TGCTGGGACAGCCCCGCTCCCAGATGTAAAGAACGCGACTTCCACAAACC30.1145912910618793No Hit
TGCCCGTAGCTGACTCAGCTTCCTCATCTTCATCTCCATCCTCTTCCTCA30.1145912910618793No Hit
GGCCTCAGTGAGGTCATCAGTGGTGCGGATTTCGAACACCTTTGTGAGCT30.1145912910618793No Hit
GTTCCCACATCAGGCACAGCAGCTGCAGTTCTCCAACGTCCCTTTGCAGA30.1145912910618793No Hit
GCCAGTGCTGGTCACTAACCAACAAGGTTGGCACCCCAGCTACCCCTTCT30.1145912910618793No Hit
CCACTGGAACGCGGCGCAGATCAACCTGATCGACACGCCCGGTCACATTG30.1145912910618793No Hit
GGATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCT30.1145912910618793No Hit
CTCTTACTCTCTAGGCCACGGAATTAACCCGAGCAGGCATGGAGGCCTCT30.1145912910618793No Hit
GCCTAACGGTCACTGGGGCCCGGGTGGCTCAAGGGACACGAGTAGGAGCA30.1145912910618793No Hit
GTTTGTTCAGGTTGCTCTGTTTACATCTGGGAGCAGGGCTGTCCCCACAT30.1145912910618793No Hit
GTTGTGCAGCTTGTTCTATTAACATCTGGGAGAAGAGCTGTTCCCACATC30.1145912910618793No Hit
CATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAG30.1145912910618793No Hit
AAATGGACCCCAACTGCTCCTGCGCCACTGGTGGCTCCTGCACCTGCACT30.1145912910618793No Hit
GTATCAACGCAGAGTACATGGGATGTCGTCTGGTCCCTGTTCAACACCCT30.1145912910618793No Hit
GCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGG30.1145912910618793No Hit
ATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCA30.1145912910618793No Hit
GCACTGGGATGACGATGAGCAGAATGGTCATGAGGATGCCCAGAATCAGG30.1145912910618793No Hit
GCGCAGCTCCTGCAGCTGGTCCAGCAGGGCCAGGAACTCCCGGGCCTGGA30.1145912910618793No Hit
GGGCTGTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTT30.1145912910618793No Hit
ACGTCCCTTTGCAGACACAGCCGTGGGCACACTTGGCACAGCCCACGGGG30.1145912910618793No Hit
GGTATATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCC30.1145912910618793No Hit
CTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTG30.1145912910618793No Hit
GGTATGGCTATCCATTCAAAAAACCAGGAAAATTACTTTCTTTTGCCACT30.1145912910618793No Hit
GGTCTGTCGGTGCCGAGGGCAGGATGGAGAAGCTGCGGCTCCTGGGCCTC30.1145912910618793No Hit
CATCCAAGCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCC30.1145912910618793No Hit
TCGCTGGACACCATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAA30.1145912910618793No Hit
AACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTCCTGCAA30.1145912910618793No Hit
TTATTTCATAGAAAAAGGAATATAGCAAACGGTCAGGGTCAGGGTTGTAC30.1145912910618793No Hit
ATGTCAAGCAGTGCAGGGGCTGAGAAGCCCTGGGCTGACCCTGCCACGGG30.1145912910618793No Hit
CCACTTGCTGAGCTGCCGCTCCGGCCGCTGACACGGCTTCCTGGGCGGTC30.1145912910618793No Hit
CCACAGAGGCGGGGCAGAAAGCCATGGACCAGCTGGCCAAGACCACCCAG30.1145912910618793No Hit
CATGACCATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATG30.1145912910618793No Hit
CCCCTTTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAG30.1145912910618793No Hit
GCTCAGTATCGTATTGAAAAAAAATCCAGGTTGTGCAGCTTGTTCTATTA30.1145912910618793No Hit
GTCCTGTTGCAACTGATAAAAAGCCACTTCCTGCAGCCGGGCCCTCTCCA30.1145912910618793No Hit
GTATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCATACGAGATCTTG30.1145912910618793Illumina PCR Primer Index 1 (96% over 28bp)
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCAGGGTCAGGGTTGT30.1145912910618793No Hit
GTGCAGCTTGTTCTATTAACATCTGGGAGAAGAGCTGTTCCCACATCAGG30.1145912910618793No Hit
CTGCAGTTCTCCAACGTCCCTTTGCAGACACAGCCGTGGGCACACTTGGC30.1145912910618793No Hit
CCTTCCACGTGCGCCTTATAGCCTCTCAACTTCTTGCTTGGGATCTCCAA30.1145912910618793No Hit
CCCGGACGGCGTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACA30.1145912910618793No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG30.1145912910618793No Hit
GAGGTACGTCTTCTCTATCCTCCAGTCGGGCGGGATCTCCTCGGGCTTGT30.1145912910618793No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.1145912910618793No Hit
GGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGC30.1145912910618793No Hit
GGAGTAACCCGACCGCCGCTGGTCTTCGCTGGACACCATGAATCACACTG30.1145912910618793No Hit

[WARN]Adapter Content

Adapter graph