FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62
Sequences flagged as poor quality0
Sequence length146
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCCTGCACTGAGCTGTCCCTGGGCCAGCACCTGCTGCGGGCC34.838709677419355No Hit
GACATATACTGCTGCGGTAAATAATACTATCCATATGTTACACTTTTGGA34.838709677419355No Hit
GTGGGACAGAGACTGGATTTTGCTTGCTTTCCATAATTACTTCACTGTCT34.838709677419355No Hit
ATATTACCATATTTACTGAATTTTCTGGAAAAGTAACTTTAATAAAGTTT23.225806451612903No Hit
AGTTTGGGGAAAGCCAGTGGCCATGCCATGAGGACACTCGAACATCTATG23.225806451612903No Hit
CTCTTTACCTGTCTACATATTACCTGTCTTCATATTCCTTAGCATAGGTG23.225806451612903No Hit
ATGGTGAAGGTGACGTTCAACTCCGCTCTGGCCCAGAAGGAGGCCAAGAA23.225806451612903No Hit
GGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTT23.225806451612903No Hit
GGTGATTAACTTAAATGAGGCTGGTTAAAGTTAAAATCCAGTCCAACTGG23.225806451612903No Hit
CCTCCACATGGTCCGAGTGCACTGAACCCAAGCACATTGTGGAATGGAAT11.6129032258064515No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA11.6129032258064515No Hit
GTACGTGATTTTTTTAATGCCAAAGTTAAAAGGAAAAAGGCACGAGAAAT11.6129032258064515No Hit
ATGCAGAAAAGGATGTTGAAAGCTATTGGCTAATGTATCATTTGAACTGC11.6129032258064515No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTACAACC11.6129032258064515No Hit
ACATAATTGTATACCTAGAAGACCCTAAAGACCCATCCAGAAAGCTCCTA11.6129032258064515No Hit
CTACTGGAGTTACTTATTAACATCAAGGCTGGAACCTATTTGCCTCAGTC11.6129032258064515No Hit
GCAATGGTGTGATCTCGGCTCACTGCCACCTCCGCTTCCTGGGTTCAAGC11.6129032258064515No Hit
AAGCTAGACAGATCCCCGTTCCTGACATCACAGCAGCCTCCAACACAAGG11.6129032258064515No Hit
CCCCAGGCAAGGCTTGTGGGCACCGGAGCTTGAGAGAGGGCGGGAGTGGG11.6129032258064515No Hit
CCCTGATGCAGGCCATCAAGTGTGTGGTGGTGGGAGACCTGTCTCTTATA11.6129032258064515No Hit
GGGTTGTTTTTTGTTTCTTGTTTTTTCTTTCCCTCCAGAATACAATGTCT11.6129032258064515No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACCC11.6129032258064515No Hit
CACTTGGCTTCTGCTGCCTCTGACTTGGAGTAATCACAGGCTCTGAAATC11.6129032258064515No Hit
CATATTAACAACCGTTGCGACGGGTCCGAGACTGTCTCTTATACACATCT11.6129032258064515No Hit
TCCTAGAGCTACCTGTGGAGCAACCTGCTCAGATACATCAAACATGGAGA11.6129032258064515No Hit
AAGTGTAAGTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATT11.6129032258064515No Hit
GCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTTCAGG11.6129032258064515No Hit
GGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATC11.6129032258064515No Hit
GAGTGTGTGTGTGTGTGTGTGTTGTTTCTTTTTTTTTTTTTTACAGTATC11.6129032258064515No Hit
ATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGAT11.6129032258064515No Hit
ACTTCTGGCTGCTGGTCTTCATGCCTCTCTTCTTCGTGTCCCCCGTGTCC11.6129032258064515No Hit
GATATAAATCATAGCTTAATCAGGTCTCAGCTACAGATTTTCATTTTATT11.6129032258064515No Hit
CTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAGAGGGTT11.6129032258064515No Hit
TGTCATATCCGTGATCATTAGCTTTGAACTTTAAGCACGACTGCTTTTCC11.6129032258064515No Hit
TCGATGGAGTGACCCGTTTCTTTACATAGGTCTTCAAGAAGCGCGATTTC11.6129032258064515No Hit
AGATACTCTAGGCTCATCTTGTACAGTTCATATCCCAGTTCTAGAATCAG11.6129032258064515No Hit
GATAGAAGGTTGGCCTCACATTCTGATGTTTGGACATCCCTTAGCTAGGA11.6129032258064515No Hit
GAACCCAGTGCTGCAACCTTCAGCTCCACCAGGGCTTTTTCATAGAAGTC11.6129032258064515No Hit
GACGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGC11.6129032258064515No Hit
GTGGCGGGTACACCTTCAGGGGGTCAGCATTCTGGAGCAGGTGCATCACA11.6129032258064515No Hit
TCAGAGCCCTGGGCACTGTTGCTGGACACAGCCTGAGAGCTGTCTCTTAT11.6129032258064515No Hit
GCCAGAGGGGACAAAGACGTGCACTCAACCTTCTACCAGGCCACTCTCAG11.6129032258064515No Hit
TTGATGTACCCAGTATGGTTTGCAAGCTGAAGGAGAAAAAATCCACCTCC11.6129032258064515No Hit
CTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAAAATATGTTGTCTTT11.6129032258064515No Hit
GGGTCAAGACTTCAGTGAGCCATGACTGTACGACTGCACTCCTCCAGCCT11.6129032258064515No Hit
CCCTAATGTAACAGGTAGTTTCGGGATCATAATCGACTTCCTGCTCGTCT11.6129032258064515No Hit
GTGAAATACTGTAAAGGTGACAAAATATCTGAACAGAAGAGGACTTAGGA11.6129032258064515No Hit
CTCCACTTCCCGAACCGTGTCTAGCGAGAATAACCAAGATGCGGCCCGTC11.6129032258064515No Hit
GCTCCCATCTCAGGGTGAGGGGCTTCGGCAGCCCCTCATGCTGTACATGG11.6129032258064515No Hit
CTCTAATATCAATTAGCACTTTGCCTTTAAAATCGCGAACACTAACGTAC11.6129032258064515No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)