FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length146
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAAGTGCTGGAATTACAGGTGTGAGCCATCACGTCCAGCCCTGTTGA36.521739130434782No Hit
CCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCT24.3478260869565215No Hit
CGCAGACACATTCAGGTGCCTTTGCAGAAAGAGATGCCAGAGGCTCTTGA24.3478260869565215No Hit
AATCAAAGACCTGACCAGTGGTATAGTCTGCATTAGTAAGCAAGCTAGAA12.1739130434782608No Hit
GGGTGGAATCATATTGGAACATGTAAACCATGTAGTTGAGGTCAATGAAG12.1739130434782608No Hit
ATTCTGTTCACACCATGTATAATCTTGATATTATCAATAACTGTGGATAC12.1739130434782608No Hit
CCTATGTGAAGCGTTCCATTAAAGTGAAAAGCCTAAATGACATCACAGCA12.1739130434782608No Hit
CACTAGGACAGCATCGGCATAGCAAACACGGGGCACTTCCACACAAACAT12.1739130434782608No Hit
GTATTTGGTAACATGCAATCTAGTAAACTTCCGGCACAAAAATACCTGGC12.1739130434782608No Hit
ACGCAGAGTACATGGGGTTCATGGCGATCTACTACGAAAAAGCCATCCTC12.1739130434782608No Hit
CTGGTGGTATTTTGCTATGTCATCTTGCTTATGTAGTTTGTATAATTTTA12.1739130434782608No Hit
ATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTAC12.1739130434782608No Hit
GTATTCTATAGCTCCATTATGGCCGTTATATGGAATCATTGGAGTGCCAG12.1739130434782608No Hit
TCTTTAACTTTATTTTTACAATAAGCCAACATCTGTCATGCAGCCATCAA12.1739130434782608No Hit
GGGTTATAATAATGTTAACATGGACATGATCTTCTTTATAATTCTACTTT12.1739130434782608No Hit
CCTATAAACGGGATTGTTTTAGTGTTGGCAGTAATGTTGATATAGATTTT12.1739130434782608No Hit
ACGCAGAGTACATGGGGACAATGCGTCTCTGGCACGTCTTGACCTTGAAC12.1739130434782608No Hit
TCAGCCAACAGGATTCCTGAGCTGAAGTGAAGATGACCACATTCAAGGAA12.1739130434782608No Hit
GTACATGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGC12.1739130434782608No Hit
TCTATTGGTATTAATTCGGGGCTCTGTAGTCCTTTCTCTCAATTTTCTTT12.1739130434782608No Hit
GTAAAGGAGATGCTGTGCTGGCCTTCAGCCTGGACAGGGTCTCTGCTGAC12.1739130434782608No Hit
GTCCTGGAGGTCCACGTCCCGCAGGTGCGTGCAGCAGCACCCGCCAGGAG12.1739130434782608No Hit
CTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTTCTATCT12.1739130434782608No Hit
TTCTTATTGTGCGTGTGGACGGGGTTGACGCCTGTTGCCTGTCTTTGATT12.1739130434782608No Hit
GCAAGATTCTGTCTCAAAAAAAAAAAAAAAAAAAAATTACTCTGCGTCTG12.1739130434782608No Hit
GTCATACTCCCAGAGTTGGTTGCCTTTTAGGTGGTGGCATTTGAGCATTG12.1739130434782608No Hit
GAAATAGTTGATGCAGATGAGAAAGTTCGACACAGCAAACTGGCTGAGTC12.1739130434782608No Hit
GGGTATGCTGTTCGATTTCTTAAAGGACTGAATATTCGGTGGCAGTATGG12.1739130434782608No Hit
AGTCAGAACAACTACTGGAAAGCCATGGAAGGCATCTTCATGAAGCCCAG12.1739130434782608No Hit
AATGGATACATTCCTGGACACATACACCCTCCCAAGACTAAACCAGAAAG12.1739130434782608No Hit
GATTGGAGCCACATTTGGGCCAGGAGCAACTATTTAAAGGACTCCGCGTC12.1739130434782608No Hit
CCTATAAATATATCAAACGTGGAGAGCAGAAATGACTCGAGTTGACTTTC12.1739130434782608No Hit
CCAAACATACAATAGCTTGGAGAACATTTAGAAAACAAAAGCCAATGTAA12.1739130434782608No Hit
GAAGATATATCTTCCCATTTGCATCAACATGCTTTCCTGTTTTAATAGTC12.1739130434782608No Hit
ATCCAAATGAGTGCCCTTTTCCAATCTCAGCACTGTCTTGGTGGAATTGG12.1739130434782608No Hit
ACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGCA12.1739130434782608No Hit
CACACCGTCTGTACTCCCGAAGAACTGATAGTTTTATTGGGGAATAAAGC12.1739130434782608No Hit
GGTTATACCAGTGCCACCAAATTAGAAAAGAAAAAGAAACATATAGCTGT12.1739130434782608No Hit
GTATTGGCTGCAGGGCAGGGAAGGCATTGCCGACTAGATAACCGTGTGAG12.1739130434782608No Hit
CACATAGTATGTACTCAGGAAAGAAATGGAAAATGTGGTTTTAGCATTGA12.1739130434782608No Hit
AGACTGTAGTTGATGATAATTTTGGTTGTTCCATCTTGATCAACCAAAGG12.1739130434782608No Hit
ACACCCCTTCATGCTAAAAACTCTCAATAAACTAGGTATTGATGGAACCT12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)