FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length146
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTGGGAGGGAAAGTGTTGTGAGACCTGGTAATTCTCAGATGAGGGAGG36.521739130434782No Hit
GGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCG24.3478260869565215No Hit
GCTCTGATGTGTCTCTCACAGCTTGAAAAGCCTGAGACAGCTGTCTTGTG24.3478260869565215No Hit
ATATTATTTAATTTTAAAGGCAAAAATACAGTTCTGTTTTGAACACCAAG12.1739130434782608No Hit
CTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTA12.1739130434782608No Hit
TATATATCCTGATTCTCAAATTCCACGTCACTATTTCTCATTGGGAGAGA12.1739130434782608No Hit
GTCTAGAACTCCTGACCGTGTGATCCACCCGCCTCGGCTTCCCAAAGTGC12.1739130434782608No Hit
ACGCTGCAGCGCGCGGACCCCCCAAAGACACACGTGACCCACCACCCCAT12.1739130434782608No Hit
TTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTG12.1739130434782608No Hit
GTACTTAAAGTGGCGGTAGATGGTAATGTAATAAGGCAAGTGTTGGAGAA12.1739130434782608No Hit
GTGCTAATTGATATTAGAGAATATTGGATGGATCCTGAAGGTGAAATGAA12.1739130434782608No Hit
AGGTTGTAGTGAGCCCAAATCATGCCACATGTCACTGCACTCCAGCCTAG12.1739130434782608No Hit
ATTTTCAATGATGCATTGGTTTTCTTACCTCCAAATGGTTCTGACAATGA12.1739130434782608No Hit
ATGGGAGGCAGGAAGCATTAGGTAAAGGGGAGCACAAAACTTGGAAGATG12.1739130434782608No Hit
CATTAAATGTATCCACAGTTATTGATAATATCAAGATTATACATGGTGTG12.1739130434782608No Hit
ATCTTTAATCCTCTCACTCCACAAATTCATAAGCTTCACCATTTTACTTC12.1739130434782608No Hit
ACATAATTGTGAACAATACATAATTGTCCCATACAAAGAAACCTCCCAGA12.1739130434782608No Hit
ATACAGCACACCAAAAGCTTGACTGCCAGTGAAGATGGACCTGCTCTTAT12.1739130434782608No Hit
GTATATCTTCATCTCAATGGTGACATGGCCACTGCCCAAGGAACTTGTGG12.1739130434782608No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC12.1739130434782608No Hit
TTCTTCTGCCTCCTGTAGGTTCTTGGCAGCCACACTTTCATATTGCTGAC12.1739130434782608No Hit
GTATTTCATCTTACCCAACCCCTTATGAAGATGTCAATTTAAACGCTATT12.1739130434782608No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTAGACAGTATATTTCCTG12.1739130434782608No Hit
TCTTCACACCATGTCTTAATTCCTTCAGCAGCTCCTCTTGAAGCTGGAGC12.1739130434782608No Hit
GTCTGTATATAGATATTGCAGACCTGGGACCTGTTTTTGTCCCGCTGCGA12.1739130434782608No Hit
GTCTTGTCTTATATGTGTTTGAATTTGAAAACTTATGAAAGACTTTTCCA12.1739130434782608No Hit
GTGATATATTTCTATGTGTATGCAAGTACAAGTATATAATATGTCACCTG12.1739130434782608No Hit
GTATCCGCTGCTCTTGTGACGTTGTGGAGATGGGGAGCGTCCTGGGGCTG12.1739130434782608No Hit
CAAGAGGAATGTGGACACATTTCATATCCCATTTGTAGAGTAAAGCTTCA12.1739130434782608No Hit
GTTCATCAGGGATATTGGTCTGAAATTTTCTTTTTTTGTTGTGTCTCTGC12.1739130434782608No Hit
CTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTC12.1739130434782608No Hit
GAGCAGAGAAGCTTGAAGAACGGGGATCCTCTCCTGTGGGCAGGGGAGCC12.1739130434782608No Hit
ATTCTAAGCAGAGTATGTAAATTGGAAGTTAACTTATGCACGCTTAACTA12.1739130434782608No Hit
GGGCTGGTCAACTACGAAGCATGTCCTTGGCTCTGAATTTCCATATTAAA12.1739130434782608No Hit
CTTTAGGACATACCCAAAGGGCTACAAACCTCCTGATGAAGGACCTTCTG12.1739130434782608No Hit
TCCTTTGGAAACTTTTCTGTGGTCATCTGTACTCATGGCCCTTACTTAAG12.1739130434782608No Hit
GCCTGCGGGGAAGGGAGTCGCCAGGCGGCCGTCATGGCGGTGTCGGAGAG12.1739130434782608No Hit
GAGTAGTAGTGTGGATGTTGTTGTTAGACACTTCTTTTTGTCTTTAAATA12.1739130434782608No Hit
GACTTAGGAAGCTCTTGAGGACGGTTTTTAATTCAGAGAGTGTGGCTTCT12.1739130434782608No Hit
AATACATATTGATTTGCCAAATGAACAAGCAAGATTAGACATACTGAAAA12.1739130434782608No Hit
TTGTAACCCAGGGCGAAATTATTCTGTGACAGTTTGGATTTGGCTGTGTC12.1739130434782608No Hit
CCACTAGCATCAGTCCCTCATGATCAAAGTAATTGCAGCTCCATAAAATC12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)