FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179
Sequences flagged as poor quality0
Sequence length146
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63.35195530726257No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA42.2346368715083798No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA42.2346368715083798No Hit
CACTTATCCTGGGCTTCATCCAATGGTGGGTGCTAACTCTTTAATAGCCT31.675977653631285No Hit
GGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCCTGTCTCTTA21.1173184357541899No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.1173184357541899No Hit
ATATTGCGTCCTTGTGGCGTTCAGGTTCGTTAATAAAGGGTCTTTGAGGG21.1173184357541899No Hit
CGGTTGAACCATGTTGATTTCCCTGCGTTTGTATAGCCGACAAGCGCAAT21.1173184357541899No Hit
AGTCAATCGTCTTTGCGAAGTCCGAGTCCAAGTTCTTCTAGTCTCGCTTT21.1173184357541899No Hit
GTACATGGGGTTCAGGATAAAATGGCGACCAAGGATTCTCAAGCTGACAT21.1173184357541899No Hit
CGCATGAAGGCCGCGGGCGGCGGCGTGATCGTGAACGACATCGGCAACTC21.1173184357541899No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA21.1173184357541899No Hit
GCTTCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTGACG21.1173184357541899No Hit
ATCATATACCCTGTAGAACCCGACTTTTGGGTTTAGGGGCCTGCCGTCAG21.1173184357541899No Hit
GATCTACACTTTTTTTTTCGTCGGCAAAAAAAAAAAAAAAAAAAAAAAAA21.1173184357541899No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG21.1173184357541899No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC21.1173184357541899No Hit
CGACCAGTGGCTATGGCTCATCCGCAGCAGTGCAATACAACACACACAGT21.1173184357541899No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAACTGTCTC21.1173184357541899No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAA21.1173184357541899No Hit
GGACTCCATCGCATAGTGGATCGGCCCGAGGTCGTGAGTCCAGAGCCAGT21.1173184357541899No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA21.1173184357541899No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA21.1173184357541899No Hit
CGTGACGAAGCTGGGCTCTGTGACCGGAAGTGCACACGTCTGGGAAAAAA21.1173184357541899No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTA10.5586592178770949No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCGAC10.5586592178770949No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTCCCCCTACACGACGCTATTCCG10.5586592178770949No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAATCGTACGCT10.5586592178770949No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTA10.5586592178770949No Hit
ATCAACGCAGAGTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAA10.5586592178770949No Hit
GCTCTAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAGGT10.5586592178770949No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.5586592178770949Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACGTTTTTTTTTTTTGTTTTTTTTTTTTTTTGGGT10.5586592178770949No Hit
GTATCAACGCAGAGTACATGGGAATGTACGGCGACCACCGAGATCTACAC10.5586592178770949Illumina Single End PCR Primer 1 (100% over 24bp)
ATGATATCCCGATGCTGACGGCTTACAATAAACGTGATCAAAAACTGCCT10.5586592178770949No Hit
ATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCACG10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.5586592178770949No Hit
ACGCAGAGTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATAAAGTGTGATGA10.5586592178770949No Hit
TGGTGAAACCCTGACACTACTAAAAATACAAAAATAAGCCGGCGTGCTGG10.5586592178770949No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG10.5586592178770949Clontech SMART CDS Primer II A (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACA10.5586592178770949No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACCTGTCTCTTATAC10.5586592178770949No Hit
TATTACGGCAGACTGAGCCGGCGCGCGGCGGGGAGTTCCCCCGCATCCGG10.5586592178770949No Hit
ATGAAGACCCACCCGGCCAGGCAGCACCGCGAGCAGCCATCCGAGCGGCC10.5586592178770949No Hit
CGCGGGAAGGAGACATAACGATAGCGACTCTGTCTCAGGGGATCTGCATA10.5586592178770949No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTATGTCTCTTATAA10.5586592178770949No Hit
ATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA10.5586592178770949No Hit
AGATCTCGGTGGTCGCCGTATCCCCATGTACTCTGCGTTGATACCCTGGC10.5586592178770949Illumina Single End PCR Primer 1 (95% over 22bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTAAAAAACCCCAAT10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTT10.5586592178770949No Hit
GGTTATGAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAAGATGGGA10.5586592178770949No Hit
CAACGCAGAGTACATGGGAAGCAGTGGCATCAACGTAAAAAAAAAAAAAA10.5586592178770949No Hit
AGGTGACGCTGCGCTACGTCGCGCCGTGGCGGGAGGCGGGGCTGGCCGCC10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAT10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA10.5586592178770949No Hit
TATCAACGCAGAGTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
CGTCTGAACTCCAGTCACAAAAAAAATCTCGTATGCCGTCTTCTGCTTGC10.5586592178770949RNA PCR Primer, Index 19 (96% over 28bp)
GGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
CTTGTTAACTTGTCATATCGCGCACGTAGTAGCCTAGAGCGCCAGGGGCG10.5586592178770949No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTA10.5586592178770949No Hit
GAAGCAGTGGTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAC10.5586592178770949No Hit
GTACAGAATATATAAAGCGTGACGGATGAAAACGCACCTATTGTCACCGA10.5586592178770949No Hit
CCTTTGGGTTCCAGAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAG10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTATTTATTTTTATTTTTTTGTAAAATAAAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACATGGGCGGGGGCCCCCCCCAACGAACAGTGTC10.5586592178770949No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGATAACCCAAGTAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT10.5586592178770949No Hit
GTACATGGGACAACAGCCCGAGCGAGGTTGCGGCCAGCGAAAAGTCACGA10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTG10.5586592178770949No Hit
ATCAACGCAGAGTACATGGGGTCATCACACTGAATACCAAAAAAAAAAAA10.5586592178770949No Hit
GTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATATG10.5586592178770949No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.5586592178770949Clontech Universal Primer Mix Long (96% over 25bp)
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAACCCCATTTAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCG10.5586592178770949No Hit
GCCATATGCCTCGGGAATAAGCTGACGGTGACAAGGTTTCCCCCTAATCG10.5586592178770949No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACATAGGAGGCGGC10.5586592178770949No Hit
GTACATGGGAAGCAGTGGTATCAATGCAAAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
ATCTGACGCTGCCGACCGAAAAAAAAAGTGTAGATCCTGTCTCTTATACA10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTAAC10.5586592178770949No Hit
GTCCTGCAGGAACCAGTTGGGAGGGAGGTCTGTACCTTGGCACTCCATCT10.5586592178770949No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTAGTATCAACGCAAAAAAAAAA10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGG10.5586592178770949No Hit
TTCATGAAATCAACACACAGCTTTCCACTGTCATTCGCCATAGAAGCCGA10.5586592178770949No Hit
CTTCCGATCTGGTACCAACAGGTCCTGAAAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
CCTTCCCATGTACTCTGCGTTGATACAACTGCTTCCCATGTACTCTGCGT10.5586592178770949Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTAAAACA10.5586592178770949No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA10.5586592178770949Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA10.5586592178770949No Hit
TGGTGAAACCCTGACACTACTAAAAATACAAAAATAAGCAGGCGTGCTGG10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT10.5586592178770949No Hit
AGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGC10.5586592178770949No Hit
CTAATCTCAAGTACCCAGGGTCACAAACACTGCGGAGGGCCGCAGGGTCC10.5586592178770949No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAACA10.5586592178770949No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTATGCGTTTAAAACCCAATTAA10.5586592178770949No Hit
GAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA10.5586592178770949No Hit
GCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTCAAGCAGCCGAAG10.5586592178770949No Hit
GGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACATTTA10.5586592178770949No Hit
AGGAGATAGAGACCATCCCGGCTAACACGGTGAAACCCCGTCTCTACTAA10.5586592178770949No Hit
GGTTGTAGTCGTGTGGCACCAGCGCGGCTACTCCGATAGCGACTGGACAC10.5586592178770949No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACATCTGACGCT10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTGTCCAGTAAAAT10.5586592178770949No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAT10.5586592178770949No Hit
GGGATGAGCTGCGTCACGCGGAAACCCGCCATGCGGCCGCGCGGGTTCTG10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACC10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAC10.5586592178770949No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAGAAA10.5586592178770949No Hit
GGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTATACCAA10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGACG10.5586592178770949No Hit
ATCAACGCAGAGTACATGGGACCAGACATCTTCCAGCAACTCCAGTCCTT10.5586592178770949No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAATTAC10.5586592178770949No Hit
GATGTGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAGTACTCTGCGTTTA10.5586592178770949No Hit
GAACACTGTAGCCGCCTGGCAGGACCATTTTTCTGGTCATCGGGTCCAGC10.5586592178770949No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCA10.5586592178770949No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTACAAC10.5586592178770949No Hit
GTACATGGGTGATCGGCGACCACCCAGATCTACACAATTTCCCTACCAAA10.5586592178770949No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTT10.5586592178770949No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
GATAATATCCTTATCTTGAGACGCATAGCAAATGTAGGAGAGAGAGGTTA10.5586592178770949No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTAAACCAAACCC10.5586592178770949No Hit
TACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTAT10.5586592178770949No Hit
ACGCAGAGTACATGGGACGGGGACCCCCCCCAAAAACCAAGTCTAATATA10.5586592178770949No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAGCGGCCGCCC10.5586592178770949No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG10.5586592178770949No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAG10.5586592178770949No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCTGACGCAGCC10.5586592178770949No Hit
AACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
GCTTATCCACTTCTTTTTGAGAGCCAACCGTATAAAGAGTTGTGCCTGCG10.5586592178770949No Hit
CTGACCATAGTGCTCGTACGCTAGTCTAGCCTAGTAAAACCACGATCAGC10.5586592178770949No Hit
GTATCAACGCAGAGTACATGGGAATGATACGGTGACCACCGAGATCTACA10.5586592178770949Illumina Single End PCR Primer 1 (96% over 28bp)
CTGCTTCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCTGACGC10.5586592178770949No Hit
ACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5586592178770949No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG10.5586592178770949No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAA10.5586592178770949No Hit
GAAATCAACATGGTTCAACCGCCTGACGAGTGCTGACAGCTATGAAGAAG10.5586592178770949No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTATAAAACCCCCAG10.5586592178770949No Hit
ACCATGTTGATTTCCCTGCGTTTGTATAGCCGACAAGCGCAATTTGAAGC10.5586592178770949No Hit
TGAAAGAGCTCTCCAGTTATTACGGCAGACTGAGCCGGCGCGCGGCGGGG10.5586592178770949No Hit

[FAIL]Adapter Content

Adapter graph