FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003648668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192
Sequences flagged as poor quality0
Sequence length146
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84.166666666666666No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG31.5625No Hit
GATAACGGACTAGCCTTATTTTAACTTGCTATTTCTAGCTCTAAAACACT31.5625No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31.5625No Hit
TGGAGAAACCCTGTTTCTACTAAAAATACAAAATTAGCGGGACGTGGTGG31.5625No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA31.5625No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA21.0416666666666665No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA21.0416666666666665No Hit
GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA21.0416666666666665No Hit
GCGTCTGACGGGACAAGGGATCAACCTTTCCCGGCAAGGCGGAGGAATTG21.0416666666666665No Hit
ACTACATCGCCGGCTCCACCGGCAACGCGGCCGTGATGGCCTTCACGCGC21.0416666666666665No Hit
CGCCTGACGAGTGCTGACGTTTATTGTAAGCCGTCAGCATCGGGATATCA21.0416666666666665No Hit
CTATTCGTGTCGGTTGCCGGGCGGACGACGCCGCTCAGCGCTGCACGCGG21.0416666666666665No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC21.0416666666666665Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG21.0416666666666665No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA21.0416666666666665No Hit
GTACATGGGAGAGCCCATTCTCTTTCCCTACACGCGCTCTTCCGATCTAT21.0416666666666665No Hit
GAAATCAACATGGTTCAACCGCCTGACGAGTGCTGACAGCTATGAAGAAG21.0416666666666665No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTA10.5208333333333333No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC10.5208333333333333No Hit
CCATAATGTGATCCCTTCCGGCGGTCGGTATAAAACCAGGCAGTTTTTGA10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAT10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAAAAAT10.5208333333333333No Hit
GTACAAAAAAAAAAAAAAAAAAAAAAAAGTACTATGCGTTTATACCACCC10.5208333333333333No Hit
CGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAATGC10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTAACCC10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCG10.5208333333333333No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTAAACC10.5208333333333333No Hit
GGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAA10.5208333333333333No Hit
GAGTACATGGGCACGATACTCCCTCCCTACACGACGCTCTTCCGATCTCA10.5208333333333333Illumina Single End PCR Primer 1 (96% over 26bp)
GTGCAGTGGTACAATCTCAGCTCACTGCAACCTGCGGCTCCTGGGTTCAA10.5208333333333333No Hit
TCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA10.5208333333333333Clontech Universal Primer Mix Long (96% over 26bp)
GTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAGAGGGTTATA10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGA10.5208333333333333No Hit
GAATGATACGGCGACCACCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAT10.5208333333333333Illumina Single End PCR Primer 1 (95% over 22bp)
GTACATGGGGCAGTGGCATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTC10.5208333333333333No Hit
TTAGAGGTGAAAAGTAATGTGGAACTTTATTAAAGGTTTATTTAAATTTG10.5208333333333333No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT10.5208333333333333No Hit
CATCTGACGCTGCCGACGAAAAAAAAAGTGTCGATCGCGGTCTGGCTCGG10.5208333333333333No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT10.5208333333333333No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAACC10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAACCAAAGCCC10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATCAAACCA10.5208333333333333No Hit
AGTCAAATCAGATAGGGGAAGTAAACCAATTGTCTAGACGAGGAATTGGC10.5208333333333333No Hit
GGCCTGACACGACCACCCATCAGAGACCATGGCCTTTCACCAGACACTCG10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAACAAATA10.5208333333333333No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTCCGAAAAAA10.5208333333333333No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.5208333333333333No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.5208333333333333No Hit
GTTTATAGCTAACTTTGCTGAGGCATAGAAGTATTGGAAGAGTTTTCTTT10.5208333333333333No Hit
CAACGCAGAGTACATGGGACGGACCGAATCACACTTTTCCCTACATGACG10.5208333333333333No Hit
GTTAAGAGCCTCCGCCCGTCTCTGGGACTATGGACGGGCACGCTCATATC10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAAAAACCC10.5208333333333333No Hit
ATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCAATGAGTGA10.5208333333333333No Hit
GATCTCGGTGGTCGCCGTATCACCCCATGTACTCTGCGTTGATACCTGTC10.5208333333333333Illumina Single End PCR Primer 1 (95% over 22bp)
TATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACAGAGCGT10.5208333333333333No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGG10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATCTGACGCGGCCGCG10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA10.5208333333333333No Hit
GTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAGTCAAC10.5208333333333333No Hit
GATCTCGGTGGTCGCCGTATCATTCCCATGTACTCTGCGTTGATACTGTC10.5208333333333333Illumina Single End PCR Primer 1 (100% over 24bp)
GTCCTCAGCGTACGGCGGGACCTCTGAGAATTGGGATACAGGACCCAAAA10.5208333333333333No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAT10.5208333333333333No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTT10.5208333333333333No Hit
CTTATACACATCTGACGCTGCCGACGAAAAAAAAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTATGCGTTTATAC10.5208333333333333No Hit
CGATACCTCTTTCCCTACACGACGCTCTTCCGATCTCTTGTACCTGCAGA10.5208333333333333Illumina Single End Sequencing Primer (96% over 31bp)
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT10.5208333333333333No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGCGGTATCAACACAAAAAAAAA10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTATTTAGGAAACACA10.5208333333333333No Hit
GGCCACGAGTCTACACTCTTTCCCTACACGACCTGTCTCTTATACACATC10.5208333333333333Illumina Single End PCR Primer 1 (95% over 23bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAACTGTCTCTTAT10.5208333333333333No Hit
GGTATCAACGCAGAGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT10.5208333333333333No Hit
GTACATGGGAGGACACCGAGATCTACACTCTTTCCCTACACGACCTGTCT10.5208333333333333Illumina Single End PCR Primer 1 (96% over 32bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTTTAAA10.5208333333333333No Hit
GCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACAATGCGTTTATA10.5208333333333333No Hit
TTTTTGCGTTGATACCACCCCATGTACTCTGCGTTGATACCCTGTCTCTT10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCCAGATAACACACCC10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGAAAACAC10.5208333333333333No Hit
GGATTTAATTCTGCATTTAATTGATTCTTCAAATGAGGATTATGCGGGAC10.5208333333333333No Hit
AATTGGAGCTTTCTTAGCTGTCTTAGCAGTAGTTTATAAGGAATATATCC10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT10.5208333333333333No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAT10.5208333333333333No Hit
CAGAAATCGCAGGCAGGAAATCCACACACAGCTTTCCACTGTCATTCGCC10.5208333333333333No Hit
GTATCAACGCAGAGTACATGGGAATGATACGGCGACCACCGAGAAAAAAA10.5208333333333333Illumina Single End PCR Primer 1 (95% over 22bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCATAAAAAA10.5208333333333333No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTAGTATCAACGCAAAAAAAAAA10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACA10.5208333333333333No Hit
GGCATACAGTAACCAGGCAAGAGTTCAATCGCTTAGTTTCGTGGCGGGAT10.5208333333333333No Hit
GTACATGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCTCCGC10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAAGCTTCCCATT10.5208333333333333No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAGTACT10.5208333333333333No Hit
GCGTCAGATTGTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA10.5208333333333333No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA10.5208333333333333No Hit
GCCGAAGCACTGTTTTTTCATGTCCCGCATAATCCTCATTTGAAGAATCA10.5208333333333333No Hit
ATCAACACACAGCTTTCCACTGTCATTCGCCATAGAAGCCGATACCGTGA10.5208333333333333No Hit
ACCGAGATCTACACTTTTTTTTTCGTCGGCAAAAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAA10.5208333333333333No Hit
CATTTGAAGAATCAATTAAATGCAGAATTAAATCCGCTTCTTTTACTTCC10.5208333333333333No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTA10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATGTGACGCGGC10.5208333333333333No Hit
TTTTTTTTTTTTTTTTTTTCACATCTGACGCTGCCGACGAAAAAAAAAGT10.5208333333333333No Hit
GTGGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAA10.5208333333333333No Hit
CGTCTGAACTCCAGTCACGAAGCAAGATCTCGTATGCCGTCTTCTGCTTG10.5208333333333333Illumina PCR Primer Index 1 (96% over 28bp)
GTGTATCAGAAAATAAAAAAAAAAAAAAAAAAAAGTCCGCAGCGTGTGTC10.5208333333333333No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGTGAAAAAAAAAAAA10.5208333333333333No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATGGG10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCGGATCAATTCCC10.5208333333333333No Hit
TTCAAGACGTTAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTA10.5208333333333333No Hit
CGCGTATAGGGACGCCCCCTGCTCGCGTTACTGCCAAGCGAGCGTGGTGT10.5208333333333333No Hit
CCCCGGGTTCGTCCCCTATAAGGGCCTAGTACCTTTCGAGCCCCGCGCGT10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGATACCACCCCAA10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA10.5208333333333333No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAA10.5208333333333333No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA10.5208333333333333No Hit
TATCAACGCAGAGTACATGGGGATACGGCGACCACCGAGATCCTGTCTCT10.5208333333333333Illumina Single End PCR Primer 1 (95% over 22bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAA10.5208333333333333No Hit
CAGAAATCGCATTCATGAAATCAACACACAGCTTTCCACTGTCATTCGCC10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTAACA10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGATAAAACAGCCCC10.5208333333333333No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAATT10.5208333333333333No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAGAAAAAAAAAAAAAAAA10.5208333333333333No Hit
GCATTCAAGACCGCTACAGCCGAAATGACTTCGAATTCTGGATCCACCGC10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAACTGACGCGGC10.5208333333333333No Hit
CTTCAACAAGAAGGACGACGCCGACCGCCTCAAGGAACGGCTGGACGGCG10.5208333333333333No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTTTA10.5208333333333333No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTATACC10.5208333333333333No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA10.5208333333333333No Hit
GGCTCGATCTGGTGCTCACTGAGATCGATGCAACGCTCGCGGCGCTGGCG10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAT10.5208333333333333No Hit
GCGCACCATCACCAGCACGCGATGGCCATGGCTGTCAGCTTCCTGCAGGG10.5208333333333333No Hit
GTGTAGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATGCG10.5208333333333333No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTATACCAAATCTACCCAAT10.5208333333333333No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAAAAAAAAATAAAAAAA10.5208333333333333No Hit
ATTTTATACCGACCGCCGGAAGGGATCACATTATGGTCAGTGCGAAATTT10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTT10.5208333333333333No Hit
CAGTACACCATCTATCTGGATTGATGTTACAGCGGCACCAGGGAGTGAGG10.5208333333333333No Hit
TCTTTAATCCTCTCACTCCACAAATTCATAAGCTTCACCATTTTACTTCA10.5208333333333333No Hit
ACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTATC10.5208333333333333No Hit
GGGTGGAAATTCGCCTGAAAAGTTTTGCCGGCGCACAAGCACGATCGGCT10.5208333333333333No Hit
ACGCAGAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTATTCGTTTTTAA10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATACCACCCCAAG10.5208333333333333No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAAA10.5208333333333333No Hit
ATTCCGCTCAACGCTTGAGGAAGTAAAAGAAACGGATTTAATTCTGCATT10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA10.5208333333333333No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAATT10.5208333333333333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTACAAAAGCC10.5208333333333333No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATT10.5208333333333333No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAG10.5208333333333333No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCACCAAA10.5208333333333333No Hit
GCAGAAGATGGCATACGAGATTTTTTTTTGTCTCGTGGGCTCGGAAAAAA10.5208333333333333RNA PCR Primer, Index 19 (95% over 24bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC10.5208333333333333No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTCGTTTAAACCACTGCAT10.5208333333333333No Hit
GTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGCGTTGAAAC10.5208333333333333No Hit
GCTTCAAGCTCCTCAAGCAGCCGAAGCACTGTTTTTTCATGTCCCGCATA10.5208333333333333No Hit

[FAIL]Adapter Content

Adapter graph