FastQCFastQC Report
Tue 10 May 2022
EGAF00003648853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences836159
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT14220.17006334919554775No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA14020.16767145961473834No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC13290.15894106264478408No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA12050.14411134724376584No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT11930.1426762134952802No Hit
GGATTACACGTGTCCCGCCCTACTTGTCGCTAGCTCAGTACCACACAGGT11840.14159986318391596No Hit
GTACCACACAGGTCTTTTCACATACGGGGCTATCACCCACTATGGCCGCC11780.14088229630967317No Hit
CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACA11060.13227149381875936No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT10950.1309559545493142No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10400.12437825820208837No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA10210.12210596310031945No Hit
TTCCTGCACCGATTACAAGTGCGATGTGGGGACGGATCTTAATAGGTTAT9720.11624583362733643No Hit
ATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAA9580.11457151092076985No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA9140.10930935384298919No Hit
GAATAAGAGCATGTGGTGGATGCCTTGGCGATGATAGGCGACGAAGGACG8710.104166791244249No Hit
GTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCC8630.10321003541192524No Hit
CAGTTTACTGTGCGTGGTAGGAGAGCGTTCTGTAAGCCTGTGAAGGTGGC8600.10285125197480383No Hit
GGTAACAGGTATCGCACACTGAATACATAGGTGTGCGAGGCGAACCGAGT8430.10081814583111584No Hit
TTACTAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGTTC8420.1006985513520754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)