FastQCFastQC Report
Tue 10 May 2022
EGAF00003648854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences836159
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT13060.15619038962685325No Hit
GGATTACACGTGTCCCGCCCTACTTGTCGCTAGCTCAGTACCACACAGGT12760.15260255525563918No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12380.14805796505210134No Hit
GTACCACACAGGTCTTTTCACATACGGGGCTATCACCCACTATGGCCGCC12310.14722080369881804No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA12160.145426886513211No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT11720.14016472943543035No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA11320.13538095027381156No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT10740.12844447048946434No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10010.11971407351951005No Hit
CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACA9860.11792015633390301No Hit
TTCCTGCACCGATTACAAGTGCGATGTGGGGACGGATCTTAATAGGTTAT9820.11744177841774113No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA9730.11636542810637689No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA8610.10297084645384431No Hit
TTACTAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGTTC8550.10225327957960148No Hit
GTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCC8540.10213368510056102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)