FastQCFastQC Report
Tue 10 May 2022
EGAF00003648856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences819417
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT12950.1580391912786774No Hit
GGATTACACGTGTCCCGCCCTACTTGTCGCTAGCTCAGTACCACACAGGT12710.15511027962563625No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12390.1512050640882481No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA12040.14693373459422981No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA11680.1425403671146681No Hit
GTACCACACAGGTCTTTTCACATACGGGGCTATCACCCACTATGGCCGCC11500.14034368337488728No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT11310.13802496164956304No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT10680.13033656856033007No Hit
TTCCTGCACCGATTACAAGTGCGATGTGGGGACGGATCTTAATAGGTTAT10090.12313632741327066No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG9970.12167187158675011No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA9970.12167187158675011No Hit
CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACA9440.11520385835295094No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA8920.10885788310469517No Hit
TTACTAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGTTC8680.10592897145165404No Hit
CAGTTTACTGTGCGTGGTAGGAGAGCGTTCTGTAAGCCTGTGAAGGTGGC8460.10324413576969968No Hit
GGTAACAGGTATCGCACACTGAATACATAGGTGTGCGAGGCGAACCGAGT8440.10300005979861293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)