FastQCFastQC Report
Tue 10 May 2022
EGAF00003648940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003648940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42098
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1370.32543113687111025No Hit
TGCTTATACTGGTCCAAGCAAGCATTAGGTCATAGCTTGTTCCTCTTCCT1290.30642785880564394No Hit
GTGCAGCACCACGCGTGTGTCAACGTAGCACCCTCAACGATCGAAACCCA1250.29692621977291084No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC790.18765737089647966No Hit
TTTATAACCTGATGCATCCACCTCACTACTGTGTCCAGTTTCCATTGGCT730.17340491234737992No Hit
CTCTAAGTCCGCCTGCGCGTACAGCTGCTGGGCCGGCTCGGACACCAGGA700.16627868307283006No Hit
GTATAAGCATGCCAGGGCAAATATTTAGGCTAAATTGTGGGAGCTAAGAA690.16390327331464677No Hit
CTACAACACGGCGCTGGTCGCCTCGCTCACGCGCACGACGGCGAAGCCAA680.16152786355646348No Hit
GTCTGCATCCGTGCCGGCCAGCACCCCTACAACACGGCGCTGGTCGCCTC670.1591524537982802No Hit
GTACATGGGAGTGCGGGTGCAGACAATCTTCTGTTGGGTGGCATCATTCC670.1591524537982802No Hit
GACTTAGAGTACCCCGTGCGCAAGGGCGTCGCGCTCGATCCCGTCATTCG610.14489999524918049No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT590.1401491757328139No Hit
AGCATGAACAGTGCACCTGGGACAGGGAGCAGCCCCAAATTGTCACCTGC580.13777376597463062No Hit
CTATAGAGAAGTGCTGAGCAGAAGCGCTCCATTTAGTCAACGGCTAATCC570.13539835621644733No Hit
GTAATAAAGAGATCAATGTATTTTATGTTCTTAGCTCCCACAATTTAGCC560.13302294645826404No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT550.13064753670008075No Hit
GTGCTGCACTGACCGCGGTTCGGCGGTGCCCACCGCGCGCTGGGGTGGAC550.13064753670008075No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG540.12827212694189746No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500.11877048790916434No Hit
GTACATGGGCAAGGTCTGCATCCGTGCCGGCCAGCACCCCTACAACACGG500.11877048790916434No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC490.11639507815098105No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG480.11401966839279776No Hit
GGCTAAAAATGTATATGCCCAAAGATCTTCTTAAAGAACTGGTACCTGTA450.10689343911824789No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC430.10214261960188134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)