FastQCFastQC Report
Tue 10 May 2022
EGAF00003649116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003649116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23115
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1610.6965174129353234No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT970.41964092580575385No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT540.23361453601557428No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT430.18602638979017955No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT390.16872160934458144No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.16006921912178237No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT350.15141682889898334No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG350.15141682889898334No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA340.1470906337875838No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG340.1470906337875838No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT320.13843824356478476No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG310.13411204845338523No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG310.13411204845338523No Hit
GTGTGAGAGGACGCGTTGGGGGTGACTTTGGAAATGTGGGCTTGGATTCT300.12978585334198572No Hit
AGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGC290.1254596582305862No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG290.1254596582305862No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA260.11248107289638762No Hit
ATTAGGAACTATTCAAGTTAAAAAAACATGTTAAAAGGCTTAACTTGAAG260.11248107289638762No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC260.11248107289638762No Hit
GGTATAAGAAGTGTACCCCTTCATGGCTTGCTGCCTGCAGGAAGACACAG260.11248107289638762No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA260.11248107289638762No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT260.11248107289638762No Hit
ACTCTATAGAGAGCCCAGAGCAGCGTGAGCCGTGGGCCAGGGCTGCCTCC250.1081548777849881No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC250.1081548777849881No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT240.10382868267358858No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT240.10382868267358858No Hit
TCCTTATGGTTCACTCTCTCACTTCTTGCAGGTTTCTTTGTTTAAATGCC240.10382868267358858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)