FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003650830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003650830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40
Sequences flagged as poor quality0
Sequence length146
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACAGAACAACCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCGATTA37.5No Hit
GGCGTATGCAGTAGGTGATCTTTCTGTGTCTGGCATATGCAGTAGGTGAT37.5No Hit
GTCTCGCTCTGTTGTCCAGGCTGGAGTGCAGTGGCGCGATCCCGGCCCAC37.5No Hit
TCGTCGCTCTTCGTTGTTCGTCGACTTCTAGTGTGGAGACGAATTGCCAG37.5No Hit
GCTCTGGGCGATGGTGCCGATGCCGGTGGAACCTCGCTGAGCCAGGCGCC25.0No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA25.0No Hit
AAGGAAGATGGAGCTCCCCCATCCCACACGCACTGCACTGCCATTGTCTT25.0No Hit
GGTGAAGGGAGTGAACAAACTGGCTCTACCCCCAGGCAGTGTCATTTCGT25.0No Hit
GTGTGCAGACACTGCTGCTAACACATAGAAGTAGCTAGCATAGGAGAGAA25.0No Hit
CTCGGCATACAGTGGCAGGCAGGGAAAAACCCTTGCCCTGGTGGAGCTGG12.5No Hit
GTCCAGTCATGACCTCGATCCATCGCGTATAGGGACGCCCCCTGCTCGCG12.5No Hit
GCCAGATACAGTGTTGAAAAGTTCAACAACTGCACGAACGACATGTTCTT12.5No Hit
GACATAGCCTATGAAGGCTGTTGCTATAGTTGCAAGCAGGAGGATAATGC12.5No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT12.5No Hit
CACCATGTCCATAGAGAGGATGGCTATGGGGGTGCTCCTCATGGGACAAA12.5No Hit
GGGCCACACCATTTGCCGTGGCCAGGCTAGAGATCCTGCAGCTCCTGAAA12.5No Hit
CGCCAGTGCTGCGGGCTCCGGGCAATGGATGCCCCCGGGGCCCTGGCCCA12.5No Hit
ATTGGGACCAAGGTCTCCGACTATATTCTGCAGCATAAGAAAGTGGATGA12.5No Hit
CCACTACACCCGGCTAATTTTTGTATTTTTGGTAGAAATGGGGTGTCACC12.5No Hit
CGGCCACACCATTTGCCGTGGCCATGCTAGAGATCCTGCAGCTCCTGAAA12.5No Hit
CACTGCATCTGCATTCATAGCCACGAGTTTGTTATTGCTACAGGCTACTG12.5No Hit
AGGCTACAGTGAGCCATGATCACACCACTGCACTCCAGCCTGGGTGACAG12.5No Hit
GTGCATCCTCACTTTCCTGCTGGTGCGGCCCATCCAGGGCTCGCGCACCA12.5No Hit
CCACTGACTATGACCTATCTGACAAGAGCATCAACCCTCTGGGTGGCTTT12.5No Hit
CCGCTGGGCTGTGCATCAGCTTGTCAAAAGACTGCGCCCAGCTCTGCACC12.5No Hit
ACTGAGCACTGTAGAGCATGTCTTCTTCCTCAAGGCCAATGATACTTCAG12.5No Hit
CTCCTGCAGCGTGTTTTGTTCCACAGCCTCCACGAAGAGCTCATAGTCCC12.5No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)