FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003650941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003650941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length146
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCCAGACCACCTTCGATGTGGCCGCGAGCCGCGACCTTTCGGCCGAC513.513513513513514No Hit
CTACGAGACCGCGCACGGGATCATCGAAGGCGCGGACGTGCCCGCATGGT410.81081081081081No Hit
GTATTATCTCCTGATAAGATGCTGGTGAATGCAGGGGAGTGAGATTCATT25.405405405405405No Hit
GGACCACCCGGATGGGGACCCTGAAGTCCGCCGCCGGCATCGGGGGGCTG25.405405405405405No Hit
AGCACGTCGCCGGTGTGCAGATCGGGAATCTTTCCGCGGTACAGATGCAG25.405405405405405No Hit
GGCAAAGAGAGCACGGCGGCAGCCCTGGGCCACGCCGCCCTGCTCTCTTT25.405405405405405No Hit
GCCTTGAACTGCGCCACCGCGATCTGGAAGGCGCCGGGCACGAAGGCCGG25.405405405405405No Hit
CTGTGGCTCATGCCTCTAATACCAGCATTTTGGGAGGCCAAAGTGGGCGG12.7027027027027026No Hit
GTGCTCTCGCGGCTCTTCGGCCTCTTCCTCCTCTCGGTCGCACTCCGCTT12.7027027027027026No Hit
TTCCTGATCATCTTTATGGTAAACGCTTAGATCAGGTTTTAGCGGAAATG12.7027027027027026No Hit
GTCGTCCACTGTGCGCTGGGCCTGCGACTGCGCCTGGCCGATCTCCATCG12.7027027027027026No Hit
GTTTTACATGCACCTTTACCGTACCGTCTGAGATGTTCAGCTCGCGGGCG12.7027027027027026No Hit
GGCNAAGAGAGCACGGCGGCAGCCCTGGGCCACGCCGCCCTGCTCTCTTT12.7027027027027026No Hit
GTTCATCTCGCTGAAGCAGGGGTATCACGGCACGCATTTCGGCGGCGCGT12.7027027027027026No Hit
GTTTCTGTGGTCCCAGTGCCTTAAGTGTGTTCAGGATCCAAATCTAAATG12.7027027027027026No Hit
ACCTACATGTAACCAAAACAAGCTATCATGTTTACTGTATTCTACTAGTT12.7027027027027026No Hit
GAGAGAGAGTGAGTGTGAGTGTGTGTGCACATTTCCATGTGGTAAGGGGG12.7027027027027026No Hit
CTTCCACGAGCGTGCACACATTGGTGATTTTCAAGAATATATTTTATCTG12.7027027027027026No Hit
TCTATATACAATACTATTTCTATATACAAGATTACACCGTCTGCAAATAG12.7027027027027026No Hit
NGCCAACATGGTGAAACCCCCATCTCTACTAAAAATGCAAACATTAGCCA12.7027027027027026No Hit
ACTCCTTCCTGGGAGCCCCAGCCAGCTCCACCTTTCCTTCATCACCCCTC12.7027027027027026No Hit
CGCGATGGCGCTCGCCGAGGGCACCGCCAACGACTTGCTGCCGCTGATCA12.7027027027027026No Hit
GGCCAAGGTGGGTGGATTGCTTGAGGCCAGGAGTTCAAGACCAGCCTGGG12.7027027027027026No Hit
CAACAAAACGGCATATCTCTTTCCTATCGATGAACAACGGCCCGATGCAC12.7027027027027026No Hit
GGGCATAGTGGTGTGCACCTGTAGTCCCAGGTACTTGGGAGGCTGAGGTG12.7027027027027026No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)