FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003650947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003650947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGTACAAAGTTTGACAAATCCAATTAACAAAATACCATAGACTGCCT36.521739130434782No Hit
GAAGATAAAAGGCCGTTAGTGACTCTATTGTAAAGGAACTTGCTTGCATT36.521739130434782No Hit
GTCCAGCCAGGAGCCAACACAGGCCTGGAGCATTGCCTGTGGTATGGCCT24.3478260869565215No Hit
TTACAAAGAAATATGCAGTAAATGCTATCTTTCTATCACCACTATCTGAC24.3478260869565215No Hit
GATAGGGTCTCACTATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAA24.3478260869565215No Hit
GGCTCAGACTGTACCCGCTGCCCTGCAGGGACTGAACCTGCTGTGGGATT24.3478260869565215No Hit
CTTCTACAAAACAACAACTCCTTTCCTTCCTAGGCATGGTTAGCGCGGTC24.3478260869565215No Hit
GTCTGGGGTATTCTACCATCCTTTTCTGCCTCAGGTCCTTTGCATATCCA24.3478260869565215No Hit
GCATAGACTCATGGACTTTTATACTTTGGGATATAGTCTAATACTAAATT24.3478260869565215No Hit
ACCTCTGCATGTCCGTGACCAGCCCTCTCCAGTGTATCCACAGCCCCGAC24.3478260869565215No Hit
CTCACTGTGTTTCCCGGGATGGTTTTGAACTCCCAGGCTCAAGCCATCCA24.3478260869565215No Hit
GTAACTTTTAGATAAGCCCATCATGGAGCTGATAATAGCTAAGCAGCCAC24.3478260869565215No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC12.1739130434782608No Hit
GTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTC12.1739130434782608No Hit
ACGTACGCACATGCCCTGATGGCATATGGATGCCGCGCGTCCACGGCCGC12.1739130434782608No Hit
CGCCGGCGATGCCAATCGGAATTCCGTCTCCTTCGCCATACCGCTGTCGA12.1739130434782608No Hit
GTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGG12.1739130434782608No Hit
CGGCCATCCCCGCCGCCTTGAGCACTGCTGCGGCATTGCGTGACGATGAG12.1739130434782608No Hit
GGCGTGGTGGCGTGTGCTTGTAGTCCTAGCTACTCAGGAGGAGGCTGAGG12.1739130434782608No Hit
GTGCCCTTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGGCGGCCGCCCCC12.1739130434782608No Hit
CAACCGGCTTCCGCCTGGCGGTTACCCGTAATTGGTCCAGCCGCTGGTAC12.1739130434782608No Hit
GCTTCCTCATCATCAAAATCATCATCATCATCATCTTCATCATCATCCTC12.1739130434782608No Hit
GAGAGAGACAACGATACACAGAGAGAGAAAGACAGAAAGAGAGAGAGAGA12.1739130434782608No Hit
GTATCAACGCAGAGTGTTGGCAACAAAAAGCAGATTGGGTTCAATGGGAT12.1739130434782608No Hit
ATGTTGACCAGGCTGGTCTTGAATTCCTCTGGCTCAAGTGATTTGCCCTC12.1739130434782608No Hit
ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGA12.1739130434782608No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA12.1739130434782608No Hit
CAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAG12.1739130434782608No Hit
TTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACA12.1739130434782608No Hit
CTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGC12.1739130434782608No Hit
GTTTGGGTCATAAGGGTAGATCTCTCTTGAATGTCTTGGTGTTGTCCTTA12.1739130434782608No Hit
CCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGC12.1739130434782608No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)