FastQCFastQC Report
Wed 8 May 2024
EGAF00003651018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003651018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118914
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1870.15725650470087627No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1340.11268647930437123No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG1290.10848175992734246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)