FastQCFastQC Report
Tue 10 May 2022
EGAF00003651362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003651362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16941
Sequences flagged as poor quality0
Sequence length146
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1580.9326486039785137No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1090.6434094799598606No Hit
GTACATGGGAGATCATCAGCTACGGCACCTCGAGCTACGGCTACGACATC930.548964051708872No Hit
GTCCAGACCACTTCGGTGTTCTTGAGCACGGTGGAGACGAAGGCCGCTTC590.3482675166755209No Hit
GTATCAACGCAGAGTACATGGGAGATCATCAGCTACGGCACCTCGAGCTA410.24201640989315862No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT310.18298801723629066No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA290.17118233870491706No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA290.17118233870491706No Hit
GTGGAGACGAAGGCCGCTTCGCGGTCGTTCGACGGCGGCCTGGGAGCCGG270.1593766601735435No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG250.1475709816421699No Hit
GTATATATGACTCTGCATGGCTTGTAATACTGACTGGCTTGTGGAGTGGC250.1475709816421699No Hit
GCCTGGGAGCGCTCAGGTCTTCGGCAGCGTGACGCCGCGCTGGCCCTGGT250.1475709816421699No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG220.1298624638451095No Hit
ATATATGACTCTGCATGGCTTGTAATACTGACTGGCTTGTGGAGTGGCTT220.1298624638451095No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG220.1298624638451095No Hit
GGCGAGGGCTGTGCGCAGGTGCTGTTCTTCGAGAGCGACGAGGTCTGCGA200.11805678531373591No Hit
GTACATGGGTGTCGATCGAGAAGCCCTTGAGCGTGTCGGCCACGGGCGGC200.11805678531373591No Hit
CTCCCAGGCTGCGCGCACTTCCCGTCGCTGCGCCGACTCCCGCCAGGGGG190.11215394604804911No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT190.11215394604804911No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA190.11215394604804911No Hit
GCCCTCGCCCGCGTAGATCTTGGCGGGTAGCGGCGTGGTGTTGCTGAATT190.11215394604804911No Hit
GTCTTCACCAACATCCACAGCACGGTGGTCGACCCGAAGAACTTCGACGA180.10625110678236231No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT180.10625110678236231No Hit
CTTGAGCACGGTGGAGACGAAGGCCGCTTCGCGGTCGTTCGACGGCGGCC180.10625110678236231No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC180.10625110678236231No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT180.10625110678236231No Hit
CTCCTTGCCGGCCGTTGGAGGAGGAGTTGCCGGCGGTCACGGGATCGTAC170.10034826751667551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)