FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003651617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003651617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4245
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA150.35335689045936397No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT120.2826855123674912No Hit
CAAATATACAAGTCCATGTTCTTTCAGCCCCTTTGCACTCATAACGTCAG90.21201413427561835No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA90.21201413427561835No Hit
ATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCGTGACGCAG70.16489988221436985No Hit
CTTCAACAGGAGTGACACCAGGTCAGGATTTTGCAGGTCCACTGCGAGGT70.16489988221436985No Hit
TCATAGGGCAGCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTC60.1413427561837456No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA60.1413427561837456No Hit
CCTTTGCACTCATAACGTCAGACGCTGGCCTCCAAACACACAGTCATCAT60.1413427561837456No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG60.1413427561837456No Hit
CTGGTGTAGTCTCCATAGCTTCTTCTTCAGAGTCATCTTCCTCATCGTCA60.1413427561837456No Hit
GAGCTGTACGGTCGCACTGAACTCGGATAGGTCTCAGAAAAACGAAATAT50.11778563015312131No Hit
GTATAGGGACGCCCCCTGCTCGCGTTACTGCCAAGCGAGCGTGGTGTGGT50.11778563015312131No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA50.11778563015312131No Hit
CTTTATTGATGTGCCTCCTACCTTCCCCCCACAATTTCAGTCCCTTCCAA50.11778563015312131No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA50.11778563015312131No Hit
TGTCTACACTTAGCCTCTATCCATGGCTACCTGGGCATCGTGGAGCTTTT50.11778563015312131No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA50.11778563015312131No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG50.11778563015312131No Hit
CCTCCACTCCATCCTGAAGGCTACCAACTACAATGGCCACACGTGTCTAC50.11778563015312131No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC50.11778563015312131No Hit
ACCACCAGGACTCAGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTC50.11778563015312131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)