FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003651619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003651619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4470
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA190.42505592841163314No Hit
GTCCTGCACCACCCCGCACCTCCACTCCATCCTGAAGGCTACCAACTACA80.1789709172259508No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT70.15659955257270694No Hit
TCATAGGGCAGCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTC70.15659955257270694No Hit
GCATGGGAACAGGGGTCACAGTGGACACAAGGTTGGGCTGTCTCTCCACC60.1342281879194631No Hit
CTTCCTGAGTGCCTGCAGAGACACTGTCACCTCTGTGCCCACAACACCAA60.1342281879194631No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA60.1342281879194631No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG50.11185682326621924No Hit
ATCATATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAG50.11185682326621924No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC50.11185682326621924No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT50.11185682326621924No Hit
ACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTACTCCAAAGATTCAGG50.11185682326621924No Hit
TGTCTACACTTAGCCTCTATCCATGGCTACCTGGGCATCGTGGAGCTTTT50.11185682326621924No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC50.11185682326621924No Hit
GTACATAATCGTTTTGTGGAGTCGGCACAGTTCAGGTTATGGAGGCACGT50.11185682326621924No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATC50.11185682326621924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)