FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003651620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003651620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4470
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT90.20134228187919465No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA90.20134228187919465No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC70.15659955257270694No Hit
TCCTCACTCTCTGGCAGCATCTGAAGGTTTTCTAGTGTCAGCTGGCCCAG70.15659955257270694No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT70.15659955257270694No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC60.1342281879194631No Hit
CATTCATTTTCCCTCATGTCGTTGGTATTCTGAGGGAGCTGCCTGGCTTC60.1342281879194631No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG60.1342281879194631No Hit
GGCTTACGGTAGGTCCGAATGGCACAAAGCTTGTTCCGTTAGCTGGCATA60.1342281879194631No Hit
GTACATGGGACAGCAGTCCGTGCCGCCGTCCCGCCCGCCAGCGCCCCAGC60.1342281879194631No Hit
ATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACCGCCCTTAGAC50.11185682326621924No Hit
GAGTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGG50.11185682326621924No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG50.11185682326621924No Hit
GACACATTCAGGTGCCTTTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTC50.11185682326621924No Hit
GTCCTGCACCACCCCGCACCTCCACTCCATCCTGAAGGCTACCAACTACA50.11185682326621924No Hit
TCATAGGGCAGCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTGTGTC50.11185682326621924No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT50.11185682326621924No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG50.11185682326621924No Hit
CAAATATACAAGTCCATGTTCTTTCAGCCCCTTTGCACTCATAACGTCAG50.11185682326621924No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC50.11185682326621924No Hit
GTCATCATAGGGCAGCTCGTCCTCTGTGAACTCCGTGAACTCTGACTCTG50.11185682326621924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)