FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003652490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003652490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAATATCGTGCCGGGCCAGGTCGAGCTGCTCGGCACGATGCGGACGCTG49.090909090909092No Hit
CTCCTACACCTCCTGAAGTTATCACCCTGCCAATGTCAACTCCTAGTGAA24.545454545454546No Hit
CCGGTGGCCAGTTCTGAGGCTAGCACCCTTTCAACAACTCCTGTTGACAC24.545454545454546No Hit
AACCGGACACTGGTGGACTGATGCCAATGCTGCCGCCGCCCAAGCAGGCC24.545454545454546No Hit
GGCGTCCTCTGACCACAATTCGTACTCGTTGTTGTCGTTCCAGGTGGATT24.545454545454546No Hit
GCATCGGCCACCGCGCGCGCATGCACGCTGGATTCCTGGCGCACATCCAG24.545454545454546No Hit
CCCTCAACGGCGCCGGCTCCTCGGCCCAGGCCAACGCCATCAACCAGGTG12.272727272727273No Hit
GCACTGGTGCGAGCCGCCGCCTGCGCAATTCCGGCAAGACCCCGGCCATC12.272727272727273No Hit
CACCATTGATTTGGCATGGATTGTGTCGCGTAAAAAGCCACTAGCTTCGC12.272727272727273No Hit
GCCATGCCGGTGAAACAGGCGTTTGCGCCAGTGCTGAAACTGCGCAAATG12.272727272727273No Hit
TCGATGCACGCCACGCACGCCCGGCGTTCACAATGCACAGGCGCGGCATC12.272727272727273No Hit
ATCGTCGATAACCTGAACGAAGACATGCTTCGACGAACGGGTCACGACCA12.272727272727273No Hit
TCGATGCACGCCACGCACCCGCGGCGTGCACATTGCCCACGCGCGGCATC12.272727272727273No Hit
GTGCGGCACGAGTTTCGCTTTGTCGTTGCTCCAGCAAAGCCTGCGCGGCA12.272727272727273No Hit
GGCGTGGGTGAGGCGGTTGGCGTTGTCGAGGGCGTCGGTGTCGGCGCGGG12.272727272727273No Hit
CAGTTATTCATGCGTGACTAGTAAATAAGACTATAGCAGTCTCCAAAAAG12.272727272727273No Hit
GGTTTACCCATCGGCCTGATGTATGCCGCTTGTCTGCCCACCAGCCTCGT12.272727272727273No Hit
CCATCCTTGCTGCCCGAGAGCTGGATCGCCGCGCCGTCCCGGATCCTGCT12.272727272727273No Hit
CTGTAGCAGCCAGTACAAAATTATCAAATCCATGTGATTTCCTTTTGCAG12.272727272727273No Hit
ATCAAAACACAGTGATGAAAACGAAGGCCGGAGCATGCTCCGGCCTTTTT12.272727272727273No Hit
ACTTTGTTCATAGTTAGATTTCCCGTGTCTGCATCCACTGCTGTCTCTTA12.272727272727273No Hit
TCGATGCACGCCACGCACCCGCCGCGTGCACAATGCACACGCGCGGCCTC12.272727272727273No Hit
GCGCCCGATGGCCATGACTTCGCCGACGCTCTTCATCTGCGTCGTCAGGT12.272727272727273No Hit
CGCCGTAAATGCGGTGCGCCTCTTCCGCAAACCATTCGATGAACGAGGCG12.272727272727273No Hit
CCTCTGCATCTTCCAATCGTTTTGTCTTTGAAACTGACTTCATTTCCTTC12.272727272727273No Hit
CGGGTCGTCTGGCGGCAACGCCAACAGACGGCCTGGATGCTGCTAAGCCT12.272727272727273No Hit
GGCGACGACGCCTTCCTGCGCCGGCTCGGCAGCAAGCTTTACGTGGGCCC12.272727272727273No Hit
TAATGAGACTTTTCTCATACAAGGAAATAGTAAGCTTTCTCACTGCAATT12.272727272727273No Hit
GCCCCAGCCCGTGCCGAGGCAATGCCGGCGCTCTTGCCGGGTAGTCATTA12.272727272727273No Hit
ATGTGAGCGCGTTCGGCAACCTGGCGAAGCAGGGCAACACGCTCATCGTG12.272727272727273No Hit
CCTCTTTGGCCATGCAGTGCGCACTTTCCTAGTCGACGTCTTCGATAAAT12.272727272727273No Hit
AGCCTAATCTGACCGGTCGACGGCGTGCATGAACCCCAGCGGCTGTTCTG12.272727272727273No Hit
GCTCTAGCAAGTGCACGATGGATTGGGCACGGTAATGAAAAAGCGGCGGA12.272727272727273No Hit
TCGTCCTCGTCTTCACGAGTTTCGACGCCAGGGGCTGAACTTCGCGGAAA12.272727272727273No Hit
CGGCGACAAGGACCTCGAGCGCTACATGTGCGAGGCGGTCAGGATCAGCG12.272727272727273No Hit
GTCCAGTACCACGGTGGCCCATCCGAGGTAACCGCAGAGGCACTGCGCCG12.272727272727273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)