FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003652705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003652705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCAGATGATCACGATCGCGCTGTGCGCCAGGATATAACCCCATTTGCT34.225352112676056No Hit
ACCCGGAGTGGGCGTGCCCCCTCGCGCCGGCCGGGAACGTGCTCGGCTTC22.8169014084507045No Hit
TCTGGTGACCTGCGAATCCCATATTTTCAACACAAAGCTGACATTGAGTA22.8169014084507045No Hit
CACCAGCGGATGCGCCGCCGTGTCGGCATTGCGCGCCATCGCGCCAAGTC22.8169014084507045No Hit
GTATTGGCGCTGGCAATGCGCGCGGAAACCATGGCTTGCGGCTTCGCGCC22.8169014084507045No Hit
TTTACATTCTAATCCGTCATCCTCTTTCAGTTGTCTATGCCTTATCTAAG22.8169014084507045No Hit
GGATGAGGCGCGCCCAGTCGATGCCCGCCCGCGCGATCCACGTGGCCTGC22.8169014084507045No Hit
CCTTGACGATCGCGTCCGCGCCGATCTGCCGGCAGAACTCGGCCAGCAGG22.8169014084507045No Hit
CGAATGGATCGCCGGGCGCTTTTGCGGCGCGGGCCACTAACGCTGGGGCG22.8169014084507045No Hit
GACGAATTCCGTATTTGAAATTTGGGGACAAACAAAAATAATTCTTTCTC22.8169014084507045No Hit
GTGCGGCCATCACCGGCGCGGGCGAGCTGCAGCAGGCGTTGGGCAAGGCG22.8169014084507045No Hit
GTGTACACCTGTGTGCCTGTGTGTGCATGAGTGTGCCCATGTGTATTGTG11.4084507042253522No Hit
GTGTCTGGTCAGAGACATCAAGAAATAACGCCGGAACATTAGTGCAGGCA11.4084507042253522No Hit
GCCCTCCCCGGAGCGCGAAGAGGCCTTCGTGCGCTACGCCCGCGAGGAAG11.4084507042253522No Hit
GCGAAAACATATTCTCCGGCTGCGGCCGTTTCGTCGGCATCGGCGCTCTT11.4084507042253522No Hit
CACTCCTTGCCACTATCCTCTGAAAAGATGGGGGAACTGTGTAGGAACCT11.4084507042253522No Hit
CCCCGTGCAAGGCTCCGCTGGCGACACCCGGACGCCCTCAGCCCCTCGGA11.4084507042253522No Hit
ACCGTGGCACGACCCGGCTGCGCCTGGGTCGCCAATCTGTCTCTTATACA11.4084507042253522No Hit
TCCATGCTGCTGGCTGTAGTGCTGTTGTCGCTGGCGCCGGTCAGCATTCG11.4084507042253522No Hit
CCCGAGTCGCGACCCGGCCATGTACAGGCCCCAGACCCTGTCTCTTATAC11.4084507042253522No Hit
ACGCAAGCTCCACGGGCACCCCCGAAGGCGTCGTAAAGCGAAGGCTCAAG11.4084507042253522No Hit
GTGCGGGTGCTCGGGTTCTCGCCGGGCGCGCGCCGCGTCGCGACGTACCA11.4084507042253522No Hit
CCCCAACACCCCACTGTTGCAAGGTATTGCTGACTACAGACCCAAGGATG11.4084507042253522No Hit
AGCTCGCCGTGCTCTGCCTCGACCTCGACCGCTTCAAGGAGGTCAACGAC11.4084507042253522No Hit
GGCATTAACGGCGCAATTTCCGATACCTACGCTTCAATGATGGCAACCAT11.4084507042253522No Hit
ATGCAGCTCATCGAGGACATGACGCAGGACTGGAACGCGGACCGCTTCCG11.4084507042253522No Hit
GGACGAGCCGACCAACCATCTCGATCTCGACACCAAGGAAATGCTGATCA11.4084507042253522No Hit
CTCTTAACTCGTATCAAATAGACTGCAACAGTTGGAGTTACACATCAAAA11.4084507042253522No Hit
GGCCCCTGTAAGGTGGGGCCTAGGAGTTGGGGACAGAGCCTCCAGCTGGA11.4084507042253522No Hit
CAGAATGGCCGATGAGCACTCGCCGCAGAAGAAGCGTCGAACGCGCTTGC11.4084507042253522No Hit
CACCGAGCAGGGCCGCGCGCTGTATCCGGAGATCCGGCCGCTGATCATCG11.4084507042253522No Hit
GCCATAGATCTTCTGAGCGTGTTCGGCCAGCGCGCGCGACGCCGGCGTGG11.4084507042253522No Hit
GATATCTCCAAGAAATCAAATTATTTAATAGTAAGCTTTCCGGGCCAGGC11.4084507042253522No Hit
GTTCTTTTCAAGCCACGCGTGGCCCTTGGCCTCGTCGCGCGAGACCTGGC11.4084507042253522No Hit
GTTGCAGTCCATCGCGGTGTCGCCGCCGCCCAGGACCACCACGCGCTTGC11.4084507042253522No Hit
GCGGTCCACGCGAGCCTCGGGCTCGGCGACACCCTGCGGGCGGTCGTCGA11.4084507042253522No Hit
GGTAAGGATGAAAAACAGTGAAAAACACTTCTGCATTGCATGCAGGACTA11.4084507042253522No Hit
CCATTGGCAAGATATCCCTCTTACCGAGGGGGCGGACACGAACGCGTTGC11.4084507042253522No Hit
GGCGCCAGCCAGCCAGTGTCTGCGCCTCGAGCCCGGGCAGGTGCGTGGAC11.4084507042253522No Hit
GCGTTGCTGGGCATCTTCGATGCGATCGCGCCGGCCGCCAGCGCGGCGCT11.4084507042253522No Hit
CCCTTGAAGTCACACTCAAAAAAGGCGACAGTCTAAATGACGTCTTTGCC11.4084507042253522No Hit
GCGCGGCCGGTGCGTACGGTGATGTCGATGGCGACAGGCGCGTCCGGGTC11.4084507042253522No Hit
GCGCAAGCTGAATCACGGTGTGCACGATGGTTTGGTCGCGGCGGTCGTTG11.4084507042253522No Hit
TCGGCAACGACGCCGCCATCACCATGGCCGCCGAAGCGGGCCAACTGCAG11.4084507042253522No Hit
ATGCTGCAGCAGGAGCGTGACCGCGCCGCTGGGCTGAATACTGCGGGCTT11.4084507042253522No Hit
CCGCCAGGGTCGGCTGATAACCTACCGCTGAAGGCATACGGCCCAGTAGT11.4084507042253522No Hit
CCGCAGTGGGGACCGATGCTGCCGTGTCCGATAAGTTGGCGGCTCTGGTG11.4084507042253522No Hit
GTGCGGCGTACTACACCTTCTGGCTGGATGAGGTGGAGTGGATCGATGCG11.4084507042253522No Hit
GTGTGGGTCCGCCGCATTGACGAGATTCCGTCATGACGGCGGCGCAACAC11.4084507042253522No Hit
TGTTCGACCCGCGCGGCCAGCGCGTGCGCCACCCACGACGCGGCGTTGAC11.4084507042253522No Hit
CGTTGAACCCTCCCTCGAGTACAAGGGCTGGCCGTGGGAGGAGGCGCCGC11.4084507042253522No Hit
ACCTAGCCCATAAGTCGATCGACATGGCCTTGTTCTGGGCTCGTTTGGCT11.4084507042253522No Hit
GAGCGTCCAGCCTCATACGGCCAACCTGTGGACAGAAAAACTCCCATAGA11.4084507042253522No Hit
ATCATGGGCTGCGCCAATCCCGAAGGCGCCACCGGCATGAACATCGCGCG11.4084507042253522No Hit
GGGCTGGCTGCGCGACGCCCCCGCCGACCTGCTGGCCGAGATTGCGCCCA11.4084507042253522No Hit
GCCTCGAGCTATCGCTCAGCAACCGCAATGAAGACGTGTGGCGGCATGGC11.4084507042253522No Hit
GACTTGGGCTGCTTCAGGCTGAACGCTGGGAGACCACTTCCTGTGCTGAC11.4084507042253522No Hit
ACTCCTTCCTGCCTGAAGATCGCTGCTCCGAGAAAGATCCAGGGAGTCCG11.4084507042253522No Hit
GCCATGTTGGAAATGGTGGCGCGGTCGCCCAGCGTCAGCTTGGAAGCGCC11.4084507042253522No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)