FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003652821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003652821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTATCCATTGTCATTCCCGTGGGAGGGCTGCAGGGAACAAAGACCCT31.8518518518518516No Hit
GTCCGGGGCGGCGTCTTCGGCGCGCTCGTCGTCGCCGGGTTTTTGCTGCT21.2345679012345678No Hit
GCCTCCTGGGAATCCAGTATACCCTCAGACCTTGCATCTTCCTCAGGCTC21.2345679012345678No Hit
GTATAATGTCCTTTCATTTCAACCTGAAGGACTCCCTTTATTACCTCTTG21.2345679012345678No Hit
CCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCAT21.2345679012345678No Hit
ACATCCAGGGGTAAAAGCTGGCTCTGTCATTAGAAAGCTCTGTGGCGTTG21.2345679012345678No Hit
GTCTAGACAAGCCGAATGACCCTGCAAGCCACCCCCGCCGACGTGCGCGC21.2345679012345678No Hit
TCTCTGGCGGGGGCGCAGCACAAGATGGTCGTGTTCTTCGACAAGGAGAC21.2345679012345678No Hit
TCGTGTAATCTCGCTCATGGACTTCCCCTTTCCGATCAGATTGAACTTCC21.2345679012345678No Hit
TTTCCCTGACGACTCGTGTGTGCCGTGGGGGAGCGGTAGATGGCCCAGCC21.2345679012345678No Hit
AGTGAAGCAAGGCCTGTTAGCGCCGCAGGAAACTAAGCTGCCGCGGAGCA21.2345679012345678No Hit
GGATAAGCTGATAAAGGAAGGAAAGTACACCCCTCCACCTCACCACATTG21.2345679012345678No Hit
GTCATGGGTTTTCCCTTCTGGCCGACACATAATATCGGTCCGATTTGGTC21.2345679012345678No Hit
CACCCGAGGTCAGGGGTTCCAGACCAGCCTGGCTAACATGGTGAAACCCC21.2345679012345678No Hit
GTACATGGGAGTCGTTCTGAAGCGGCGGCCAGAGAAGAGTCAAGGGCACG21.2345679012345678No Hit
GAGCGAGACATCGACCCGCGAGTTCACCCAGGTCACGGCCGAGTTGTGCG10.6172839506172839No Hit
AGGCTGCAGTGAGTCATGATCATGCCACTGCACTCCAGCCCGAGTGACAG10.6172839506172839No Hit
CGTTCAAAGCGCCGTTGTTCTTGGCAGGAAAGTTCGGAAGGTAGCGTTTG10.6172839506172839No Hit
ACATGTGCATCATCGTCTATGACGATGCGGCCTACGGCTGTCTCTTATAC10.6172839506172839No Hit
CATCGCAGGCACCCAGATACCGTGCCTGCACGTGGTCGACCTGCGTCGGC10.6172839506172839No Hit
GCTGAGGAGTCCCCCTGGAGCCCTTGAGGGAGCTTGGAACATAGACAAGT10.6172839506172839No Hit
GGCCAACATGGTGAAACCCCCGTCTCTACTAAAAATACAAAAAAATTAGC10.6172839506172839No Hit
GGATATGAGGCAGCAGTTTCTCCAGAGCTGGGTTGTTTTCCAGGTGCCCT10.6172839506172839No Hit
TCTGCTGCTTCTTCTCATTCCTCTCTGTTTTCTGCTCAATGCTGGAGATG10.6172839506172839No Hit
CCCTCCACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCC10.6172839506172839No Hit
GTGATGAAGGTGGTGCAGCTGGCGCCCTGCGCGGCGCCGCCAACGGTGAT10.6172839506172839No Hit
GATGTGTCTCTCCTTCGGGCTGGTCCGGTATGCACAGTTGGGGTACCTGG10.6172839506172839No Hit
GTCGACGGCCAGGCGCTCGCGCCCGACGGCCTGTGGGTGCTGTCTCTTAT10.6172839506172839No Hit
GTGTTGCCCAGGCTGGTCTCGAACTCCTGAGCTCAGGTGATCCACCTGCC10.6172839506172839No Hit
CAGCAAAGTGACGCAAGGGCTGGGCCGCTTCTGCATGTGGGTGTCAGGGA10.6172839506172839No Hit
CACTGCAAGCTCCGCCTGGCGGGTTCATGCCATTCTCCTACCTCAGCCTC10.6172839506172839No Hit
TCACTGCAAAGTAATCTACGACGCTCACGAGGATCTCATCGGCCAGGTTG10.6172839506172839No Hit
AACCAGACCAGCCACAGCGACGATCGTCGCAATGTATGGCAATATGAGCA10.6172839506172839No Hit
ATTCTATCTTGCACTCTTTCTCTGCCCGAGTATAACCGATTCCATGTGCA10.6172839506172839No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.6172839506172839No Hit
GCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCT10.6172839506172839No Hit
CCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTA10.6172839506172839No Hit
TTCTGGTTCTCTTCGTCTTGGCATTCGTCCTCCTCAGGCCAGTGCTCCAC10.6172839506172839No Hit
CTCCACAGAAGCATCAAAGTGGACTGGCACATATGGGCTCCCTTCACAGG10.6172839506172839No Hit
GCGCAGGTACCAGGCCACGCCGTTCCAGTCGCGGATGCGCGTCACCCTCA10.6172839506172839No Hit
GCCGATGGCTGCGAACTTCAATCTTGTTCCGGCCGCTCTACTTGAGCTCG10.6172839506172839No Hit
GAGTCCGACCGCCAGGTCGATGCCTCGGCCTGGGACAACTTCCTGCGCCT10.6172839506172839No Hit
GACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCC10.6172839506172839No Hit
TCCCAAACCTGTTCCGATGCCTGCCGAACCCGAGTTGCTTGCACCGAACG10.6172839506172839No Hit
TTATTCATCAGGAAAGACAACCTTTCTCGGAGTAGCACCACGAGGCAGTA10.6172839506172839No Hit
ATCTTCTCACGGTACTCTTTGCCCATCTGCTGCTTCTTCTCATTCCTCTC10.6172839506172839No Hit
CCCTTCGAGTGGACCGAGGCCCCCTACGATCCAGAGCGTGAGCCCCGCGC10.6172839506172839No Hit
GCGCCCGGCCGCGCGCCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCA10.6172839506172839No Hit
CCTTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGT10.6172839506172839No Hit
AATCCATACGGATCAGCGTATCCAAATCAAGAAAGGCTTCTAATTGCGAA10.6172839506172839No Hit
GGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTC10.6172839506172839No Hit
GTATGGCCCGCCTGGTACTGGTAAAACCCTCCTGGCTCGTGCGGTAGCCG10.6172839506172839No Hit
GGCCGGAGGGGATGTCGCCCGCGTTGTTCACGAGGATGTCGACGTGGCCG10.6172839506172839No Hit
TGGAAGTGGAGGACGCGCTGTATCGGCACCCGGCAGTGCTGGCTGCCGCC10.6172839506172839No Hit
CTCTCCTGAAAATGCAATTTGAAAATTCAGAATCAATTTAGCAATGATCC10.6172839506172839No Hit
CCTTTCTTGGACATCCAGAAAAGGTTCGGCCTTAACATAGATCGATGGTT10.6172839506172839No Hit
GGTTTGGGAACCGGTAAAGTTTCAATGCAGGATTTCCATTTTGTAATTCA10.6172839506172839No Hit
TAGAGAGCCTCGAGAGTCATGTCATGGGCGCTGACAGCTCCGCCCTCCGT10.6172839506172839No Hit
GTACCAGCTCACTTTTATCCATTGTCATTCCCGTGGGAGGGCTGCAGGGA10.6172839506172839No Hit
GTATCGGACTGTCGACTCCAGCTTGGAATGGCCCAGCAGTAGCTGCACGA10.6172839506172839No Hit
ACCACCGAGATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGAAAA10.6172839506172839Illumina Single End PCR Primer 1 (95% over 22bp)
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA10.6172839506172839No Hit
CTCACACATGACGCCGCACAGCGCGCCGAGGACCAGCGGAGTGGCCACAG10.6172839506172839No Hit
GAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC10.6172839506172839No Hit
ATCTTTCCATTTTCGTCTGCGTTTAGTAAATGCGTTAACTAGGCTTTAAA10.6172839506172839No Hit
GATTCTACGTCAAAAATACATCTCCAATCCCCTTCTTTTCTCGATTTCCA10.6172839506172839No Hit
GTCCCTTGTCGCCGAGCACCGTCGCGTCGCCGGCGGCCTGGGCCGCGATT10.6172839506172839No Hit
AGCTTATCCCGCTGCTTCCTGATGGTACCTGCACGTCTCATCGTTTTCTG10.6172839506172839No Hit
CCGACGGATGGCGCGTCGGCACGATCCGGCAGGCCTGCGCCCACCGGACC10.6172839506172839No Hit
GCCCGAGCACGTCTGGTCGGAGATCTCGGAGGAGGACGTCTGTCTCTTAT10.6172839506172839No Hit
GTAAAAGACTGAGAAATTTAGTGCCAGACCAAGACGAATTGGGTGTGTCG10.6172839506172839No Hit
GGTAGCTAACACAGTTCCTGGCACATAAGTGCTTTAAAACAAATTCTGTC10.6172839506172839No Hit
CGCCCGAAGCGCTGGCGCAGCAGGCTGAAGAGATCGGCCGCGCCTGCGAA10.6172839506172839No Hit
CCCCAGACATTCCCCCGGAGAAGCCACCGCTGGCACCACCACCGCCAGCA10.6172839506172839No Hit
ATTCCGGACCTGGCCAAGGGCATGTACGGCCCCGGCCAATTCTTGAGCCC10.6172839506172839No Hit
GACCTTGCTGCAGGCCGGCGATGCCAACGCCCTGGCCGAACGCTGGGAAG10.6172839506172839No Hit
GATTGAAGATGACCCATCCCGTCCGGTGCGCATCATCACCGTACGCGGAC10.6172839506172839No Hit
CTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCAGCCAGACA10.6172839506172839No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA10.6172839506172839No Hit
GTGCTCGCGGCGGGCGCGGTGGTGACTCGCGACGTGCCAAGCTTCGCGAT10.6172839506172839No Hit
GAGCGCAGATGCGCATGCTGGGTCGGCAGCTTCAGCGCCTCGCCGAGATG10.6172839506172839No Hit
AGCCCAGACATAACTAGCATTAGTATCGGTGTTTGTGCCGCTAACTAGCT10.6172839506172839No Hit
GATCCTCATCGTCGGCATGCTGGTCTTGAGCGTCGTCCGAGCCTTCGTCG10.6172839506172839No Hit
GGTACGGACTGGGCACGTGGCTTCCGAAGCTCATGTCGGACGCTGTCTCT10.6172839506172839No Hit
CAACAAGAGCCACGCGGCGGCTTACGCGCTGCTGACCTACCAGACCGCCT10.6172839506172839No Hit
TCTTCACAGTGCCCTTAGGGACAGTGAAGGTGACGGCTTTGGGTTGGGCT10.6172839506172839No Hit
TCCCCGAACTCCCGATTCAACCGGCGCGTGAGCACCGAACCATAATTCTT10.6172839506172839No Hit
GTGCTGGGACTACAAGCCTGAGCCACAGCACCCAGCCAAGAGTGAATATG10.6172839506172839No Hit
TTTTCACAGTTAAGTGGGCACCTGGTCTTTGAGAATCTTCTCTGGAGACA10.6172839506172839No Hit
GTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTC10.6172839506172839No Hit
TCATTTAGCAGACTAGTTTCTGAGTTCACAGGGCAGCCAGACAAAAAGAT10.6172839506172839No Hit
GGCGAGGGCCGCGGCGAGGCGATCGGGCCGCCGGGGCGGGACGAGGATGC10.6172839506172839No Hit
CGCTCCATCACCGTCGCGATCTGCCGTCCGCCCGGCAGCGTGAGCAGGCC10.6172839506172839No Hit
GTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAA10.6172839506172839No Hit
GCGATACCTCGATGGTCACCCGCTGCGAGGTGGAATCGTTGGCAGCAGGC10.6172839506172839No Hit
GTCATGTTTGTTCGTCTACCATGCTGCAGGTGCTGATGCTGTCTCTTATA10.6172839506172839No Hit
TCTGGAGGCTGGCAGGTTAAGCAGGATCCAGCTGCATCAGGTTAAGCAGG10.6172839506172839No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.6172839506172839No Hit
CGCAACCACGGAGTGTCCCTGACCGGATCCGAACGCGCCGGTGCCGCCGT10.6172839506172839No Hit
CAAGATACCTTTTGCTATGGACTGAATTGTGCCTCCTGCCTCCAGTTCAT10.6172839506172839No Hit
ATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATG10.6172839506172839No Hit
CCGGCGGCCTCCAGCGTCGCCGCGCCGCCTCCGGCCTGCTCGGTCGGGTC10.6172839506172839No Hit
AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGC10.6172839506172839No Hit
GGGCCTGTTCTCCTCGGCGCGCGCGTGGTGGATGCTGCGCGCCGCCGGGG10.6172839506172839No Hit
TTCTAAAGCAGGCAATCCCTGTAGCCGCAGAGAATAAACGCCTTCCCAAA10.6172839506172839No Hit
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAA10.6172839506172839No Hit
CCGAGAGGCAAGGGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCG10.6172839506172839No Hit
GCCGCGTGCCACGTCGAGGCCAGCAGGTGGGTCTTGCCGACGCCGAAACC10.6172839506172839No Hit
ATCTCTGACGACTCGAAGGTCGACTCGTTGAACGAGGAGATCGAACGTCG10.6172839506172839No Hit
CTCACTGTGTCACCCAGACTGGAGTGCAGTGGCACAATCTTAGCTGACAT10.6172839506172839No Hit
CCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTC10.6172839506172839No Hit
GCTGTATGGTCAGGCTGCCGGGCAGCGGGTAGGTCCAGCAGTCGGCGTCG10.6172839506172839No Hit
GCAAACACTCTACGAAATCATCATATTCTATCTTGCACTCTTTCTCTGCC10.6172839506172839No Hit
GCCATAGGCCTCGTCGGCGCGTCCGATCTGCGCCAGTGCATGCGTGCGTA10.6172839506172839No Hit
TATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC10.6172839506172839No Hit
GCTGCGGCTTCATCGCCGACCGCTATGCGGTGCTGGTGGACGCGCTGTAT10.6172839506172839No Hit
CCGTGGCGATTGACAGCAACGACCACCAATTCACCACTATCGGTGATCAT10.6172839506172839No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGATTGAGCAATCCTT10.6172839506172839No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAATGACTAAAATCTCGTAAT10.6172839506172839No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6172839506172839Clontech Universal Primer Mix Long (96% over 26bp)
TTCCAAGCTCACGCACGCATCCAAGTCAGACGGCTATGAGATGAAAAAGC10.6172839506172839No Hit
TCCTTGGTGAACACAAAGCCCACATTCCCCCGGATATGAGGCAGCAGTTT10.6172839506172839No Hit
GGCCTGGACCGCTATGCGTGACACCCCTGCCCTGCCCGGCGCCAGCCGCG10.6172839506172839No Hit
ACCAAGGCACTCTGTAGCAAAGCAGGCCTTCCACCTGTCTCGGGGAACCC10.6172839506172839No Hit
GACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGCGG10.6172839506172839No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6172839506172839Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTAGTAATCACGCAACGATTCGACGACCAAGTTCTCGATATCACCCAGTC10.6172839506172839No Hit
GCCTCCTGGGTTCAGGCAATTCTCTGCCTCAGCCTCCTGAGTAGCTGGGA10.6172839506172839No Hit
GCAAAGAGCTCAAGCGATGGATCGAGACCGACATCGCTGGTGAGATCAGC10.6172839506172839No Hit
TGTTCGGCCCCTCCACCACCTTCGGCAAGGACCTGATGCCGGTCGTGGCG10.6172839506172839No Hit
GTCTCATGTTTATTAAATTTGCTTTTCTCTCTGACTAGACTTGCCTTCCC10.6172839506172839No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC10.6172839506172839No Hit
GCCGCGGCCGGTTGGGCCAGTCGCAGATCAGTGGCCAGTCCATGGTGCCG10.6172839506172839No Hit
GCCCGTGACATGGGCCAACACTCGACCGACAGCCAGACCGCGGACTACGT10.6172839506172839No Hit
GCCCCGCGCAGCCGCAACAAGCCCAGCTTGCGGCGCTCATTGAGCAGCAG10.6172839506172839No Hit
GCTTTATCTGGAGTGGGGGAATGGGGGTGTGGTCAGTTGGGGCACCCAAA10.6172839506172839No Hit
AGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCA10.6172839506172839No Hit
GCCTTCTCTAGGCTGTTAAGGACCTAAAGCTGTCTTCTGTGACTAACCTT10.6172839506172839No Hit
GCCCATCCGGTCGACATCGGTACCGCGATCTCGGACGAGGCGCCGACGCC10.6172839506172839No Hit
GATGCGCGCCACGCACACGCCGCCCTGGCGGCTGCGCAGGTCGACCAGCC10.6172839506172839No Hit
CTCTAGAAGGAATCTGGATTCTGGTAACTTTACCTAGATCTTGAGAATCC10.6172839506172839No Hit
GTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGG10.6172839506172839No Hit
AAGCAGAACCACGGTTGGGCTTTTGTCTCTGGGGCAGGTCTGGTGCTTGG10.6172839506172839No Hit
CCGCAGGGTACGCAGGCGCTCCCAGGACAGCTCGACCCCGATCATGAACA10.6172839506172839No Hit
GACTTGGCGGAAGAGCTTAGTCCGTTTGATTTTAGCGACAAGTATTATTA10.6172839506172839No Hit
CATCGACGCTGATCAGTCGGCCACTGACTCGCCGGCTCCGGAGGAACTGT10.6172839506172839No Hit

[WARN]Adapter Content

Adapter graph