FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003652822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003652822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCGGGGTAGTCGCCGCCGCCGCCGCCGCCGCTGCAGCCACTGCAGGC31.8518518518518516No Hit
GTTCTCACCAGCCTGCTCATAAAGGGCCGTCCCGCTAAAGTTTCCGGTCG21.2345679012345678No Hit
GCCTTGCTGCGGCACATATCGCTCAGCTCTCGCAAGGTCTCCACATTCGC21.2345679012345678No Hit
GGCCAGGCCTTCGCCATCGTCATACACCACGATGGGCGTGTCGCGCCGCG21.2345679012345678No Hit
CAATCAGTAAAACCCAGATTTTATTTGTTTTTTTCTATTTGTTTGTTTGT21.2345679012345678No Hit
ATCGAATGGTTCGCCGACGGCGGGCCACATCGAGGGCGCGCGCACCGGCG21.2345679012345678No Hit
CACCCGGAGCTCGGAAAGATGCCGTACCTACGATTTCCGGCGGACTTCGG21.2345679012345678No Hit
GGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAATCCTGCGAAGAAAAAA21.2345679012345678No Hit
CAGGTGGATAGATGGGACCGACTGGATAATAAGCCATGGGGATTGTGGAA21.2345679012345678No Hit
TTTTTGGGATGGAGCAATCCTTTATTTTTACACACTTTGACAAGGAGGTT21.2345679012345678No Hit
GTCTCCATGTCAGAGCCCCAGCATGGTCCCCTGGACACCATGACCCACTT21.2345679012345678No Hit
TTTTAGAAGATTTCTCATCCGAAACATTAGAGGCCAGAAAGCAGTGGATT21.2345679012345678No Hit
ATCCAGAACCGTGACGCGCAGCAGACCGGCGCGCGCGAACCAACGGGGGA21.2345679012345678No Hit
ACATAGGCTTTCCGTCACAGAATATGTTTGGGCAGGAAGATCGGAACACT21.2345679012345678No Hit
GGTCTGCTCACGCTCGTCGTGGCCACCGCCCATACCGGCACCACGATGAC10.6172839506172839No Hit
AGGTTGCAGTGAGCCGAGTTTATGCCACTGCACTCTGGCCTGAGTGGCAG10.6172839506172839No Hit
TAGGAAGGAAGAGGTCATCTCGCTCGGAGCTTCGCTCGGAAGGGTCTTTG10.6172839506172839No Hit
CCGCACCACCGTGGCGGGCGACAGGCCGTTCTGACCGGATCGCCGCAACC10.6172839506172839No Hit
GTGCACCACATCGCTTTTGCGGTCGAAAACCGCGAAATGCAGCTGGAGGT10.6172839506172839No Hit
TTCTTGACGAGACCGGTATTCGGCGAGATCGCACCCGGCATGCCGATACC10.6172839506172839No Hit
ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAG10.6172839506172839No Hit
CACAAAGCCCACATTCCCCCGGATATGAGGCAGCAGTTTCTCCAGAGCTG10.6172839506172839No Hit
GGGGCTAGCTTCTCGGCAATGTCACGGGCAGTGGGATCGACGGCACGGGG10.6172839506172839No Hit
CTTTTTCATCTCATAGCCGTCTGACTTGGATGCGTGCGTGAGCTTGGAAC10.6172839506172839No Hit
CAGCACCACCGCGTGCTCGTACAACAATGGCGGCTGTACGGCCGCCGGCA10.6172839506172839No Hit
GCCCAACCTCAGCTACATCATCGGGACGGACACTTGGGTGGAGCACTGGC10.6172839506172839No Hit
CTCCCAACACCAGTTTTAACCCCTAGTCCTATCTTCCTGTACTACCTATG10.6172839506172839No Hit
GATGTCATCTCCGCCGGCACCCCCGTCGTCGTCGCTTCCCAATGCATGCA10.6172839506172839No Hit
TTTGCGCTGTTTTCCATGTGCCGCAATTCAAGTTGGGTATTGGCACCATT10.6172839506172839No Hit
TCCAGGCGCTCCTCGCCGCAGGCGTGGCCGAGGTCATTTACGCCCAGGAC10.6172839506172839No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.6172839506172839No Hit
CTATCTTGCACTCTTTCTCTGCCCGAGTATAACCGATTCCATGTGCACAT10.6172839506172839No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.6172839506172839Clontech Universal Primer Mix Long (96% over 26bp)
CAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGC10.6172839506172839No Hit
CGTCCGACATGAGCTTCGGAAGCCACGTGCCCAGTCCGTACCCTGTCTCT10.6172839506172839No Hit
GCACTGGCACGCCGCGAATCGTATTTTTCCAGCGGCAACACGCCGTACAG10.6172839506172839No Hit
CCTCGGCACCCGCCAGTACGCCCGGATACTCGGGCACTGGGTCGACGAGC10.6172839506172839No Hit
ATCTTAGCGACGTGGGCAGCAAGATCGCCCATACGTGCAAGCTCGTAACA10.6172839506172839No Hit
TTCCGGAGCCGGGGTAGTCGCCGCCGCCGCCGCCGCCGCTGCAGCCACTG10.6172839506172839No Hit
TTGCAATTGGCCAAAGCAATTTGGCTGCCCTCGACCGTGCCAGCGGATCG10.6172839506172839No Hit
ACGTCCTCCTCCGAGATCTCCGACCAGACGTGCTCGGGCCTGTCTCTTAT10.6172839506172839No Hit
GTAATAAGGACTTCCAAAATGCCTTTACCAGCCACAGCAGTGGCCAGTGC10.6172839506172839No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG10.6172839506172839No Hit
TTTCGCACTACCGTCACTGAAGCGCGGCGGAACCTTTCCCCCACGGTCGG10.6172839506172839No Hit
GGTTTGAATGGATTGGTGTAATGCCATTCCGGGATTGGTTGCCATTGCAG10.6172839506172839No Hit
GCGCACTGATGCTTTCGTGAAACTAGCTTCAGACATTAAAGACCTGAACG10.6172839506172839No Hit
TTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA10.6172839506172839No Hit
GATGCTGATCGACGCCAACGGCATTCCACGCGGCAAGCTGCTGCATCGCG10.6172839506172839No Hit
GTCACGGTTGATGGGTGGGTGCCGCCTCGCCGGTTAGTGAAGATGACCGT10.6172839506172839No Hit
GGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCC10.6172839506172839No Hit
CATCAGCACCTGCAGCATGGTAGACGAACAAACATGACCTGTCTCTTATA10.6172839506172839No Hit
GTACAGAAAGCCAAACTCGCTGAGCAGGCTGAGCGCTATGATGATATGGC10.6172839506172839No Hit
CATCAGCGCCGATCAGATTCTCGAGTCGCTCGGTCTTCCCAAGGACAAGA10.6172839506172839No Hit
GCGCGCGAGGGGCTGATGGTGATCGACGGCGGGCGCATCGTCGCGGCCAA10.6172839506172839No Hit
TTCTTGGACATCCAGAAAAGGTTCGGCCTTAACATAGATCGATGGTTGAC10.6172839506172839No Hit
TACCAATAGAAGGGCAATGCTTTTAGATTAAAAATGAAGGTGACTTAAAC10.6172839506172839No Hit
GCCTTGGCCAGCGCCGTGCGCGTGGCCGATGCGCGCGGTGACGTGGCCTC10.6172839506172839No Hit
CATCGGAAGCGCGCCGCTGCCGTTGCTGCCGCCGGTTTGGAACGACGAGA10.6172839506172839No Hit
GCTTCCTGATGGTACCTGCACGTCTCATCGTTTTCTGCCGAAGCAAACAC10.6172839506172839No Hit
ATAAATCCTCCAAAGACCCCACCTCCAACCTGCAAGCCCAACCCAAAGCC10.6172839506172839No Hit
GGAGATTATTTTAGGTATCTTTCTGAAGTGGCATCTGGAGACAACAAACA10.6172839506172839No Hit
GCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAA10.6172839506172839No Hit
GCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCC10.6172839506172839No Hit
ATCCAAATGTCACCTTCTCCTGAGTAAACACACCTGAGAAGGAGATGGAC10.6172839506172839No Hit
CCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA10.6172839506172839No Hit
GCCGTAAACATGCTTCTGATCCTGACGTTGCGAAAACGCGGATCGTAGAT10.6172839506172839No Hit
CTTCCGCCGCCGGCCGCTTCCGGCCACGAGGCGCTTCGCACGGTTGCCAC10.6172839506172839No Hit
CCTTCGAGCTTCTCGGCGCCTTCGACGAAGTTATCAGCCTTGGATACAGG10.6172839506172839No Hit
GCACGTTGGGGCTGAACTCACCCGCCAGCGCGATGCCTTGCTGCCGGTAG10.6172839506172839No Hit
GGGCAGCAGGCCGTGCATCACGAACAGCGTGGCATCGGCCGGCAGCAGCG10.6172839506172839No Hit
GGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGT10.6172839506172839No Hit
GTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTCC10.6172839506172839No Hit
GCGCGATTGTGCCAGCAATTCGCCGGTCGCCTCGGGAAAGCGCGGCCGCA10.6172839506172839No Hit
CTTAAGATCATCCAACTATTGGATGATTATCCGAAATGTTTCATTGTGGG10.6172839506172839No Hit
GCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAGA10.6172839506172839No Hit
GTTGTGCGCCGACTGCGGGGGCAGGTGGGGTCGAACTTTATGGTCGGCCT10.6172839506172839No Hit
CTCTCTATCCGGGCGGTCCTTCACCATGAGGACGGTGAACGTCAAACTTC10.6172839506172839No Hit
GGATGTACGGGTCGGATCCGCCGAGTTCGAGTACGACCTTCTTGAGGTTC10.6172839506172839No Hit
GAATGGAATGGAATGGAATGGAAAGGGGTGGAGTGGAATGGAATGGAGTG10.6172839506172839No Hit
ATAGGCGGTCTGGTAGGTCAGCAGCGCGTAAGCCGCCGCGTGGCTCTTGT10.6172839506172839No Hit
CCCCAATCCTGACCTCCGCCGGAATCGTCGGCGTCGCCCTGGCCTTCGGC10.6172839506172839No Hit
AAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATACAGGCG10.6172839506172839No Hit
CGCTGTTCCATCGCCTGCGCATCAGCCCGGTGCTCGGTTTCATCGGGGCC10.6172839506172839No Hit
CTGTTGCCCGATACCGCCGCCGCCGATGCCTGGGTGCGTCGGCCCAACAC10.6172839506172839No Hit
GGTCTTCTGCGGTGGCGGTGGCGCCGTCCTTGAGTTCAACGAAGGCGCAG10.6172839506172839No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAC10.6172839506172839No Hit
GCTCTCTAATGCATGGCTTCATTTGGCCACCAAAATGGTTTCTGGCAGCC10.6172839506172839No Hit
CACCCACAGGCCGTCGGGCGCGAGCGCCTGGCCGTCGACCTGTCTCTTAT10.6172839506172839No Hit
GGAATACCGCCTGGGATCTCCGGTGAGTGGGGGACTCGACGCGCCAGACA10.6172839506172839No Hit
CACCTCGTCGGCCACTTCGGGGTGCGGCACGAAGGGGGCGGCGATGCCCT10.6172839506172839No Hit
CCGTAGGCCGCATCGTCATAGACGATGATGCACATGTCTGTCTCTTATAC10.6172839506172839No Hit
TCCCTGGGCAAGGAATCCCGGGCCAAGAAATTCCAGCGGCAGCATATGGA10.6172839506172839No Hit
CTGATGATTTCTTCAACACAGGACATGCTGTTTAGATATGTCTGGCTGGG10.6172839506172839No Hit
CCGCTGCGGCCGTCTTCGTACTTCACCGCGGTTTCGATGAACTGCTCGGT10.6172839506172839No Hit
GTGGGTGGATCACACCTGTAATCCCAGCACTCTGGGAGGCCGAGGTGGGT10.6172839506172839No Hit
AAACCGGACTGACGCGACAGCGCGCGGTCACGGTCAACACGCCTCTTGTA10.6172839506172839No Hit
GGACGACCTCGAGGTGCCCGGCCGCGACTTCGGCTTCAGGACGCTAATCG10.6172839506172839No Hit
GGGAAGGCAAGTCTAGTCAGAGAGAAAAGCAAATTTAATAAACATGAGAC10.6172839506172839No Hit
ATCGTCGAGAGTCATAGCAAACCTCCTGGGAAGCAGCACAGGTACATAAT10.6172839506172839No Hit
CACATGCTGGCAGGCCCGGCGTGAGGCCAGCGTGGCATTGGTCAGCAGCA10.6172839506172839No Hit
CGACGGGATAAAGGCGAAAACCTAAATTTACAAAAGTTTTGCTACACGGC10.6172839506172839No Hit
AGAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAACGATGAGAC10.6172839506172839No Hit
GGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGA10.6172839506172839No Hit
GCCGTACGTGATCCTGGCCATCGCGCTACGCAAGCGCAGCGCGCACGTGC10.6172839506172839No Hit
ATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAACACTCTAA10.6172839506172839No Hit
AGATTTTTGGACGCGGTGGGATACCCATTTCGTCCGCGCCAGATAGCAGC10.6172839506172839No Hit
CTCCAAGGGCATCGGCCTTGCGGCCGCCCATTCGTTCGCGGCCGAAGGCT10.6172839506172839No Hit
AGCTTGGCCTGTAGCTCCTGCAGCCGCGCGCGCAGCGCGGCGGCATGTTC10.6172839506172839No Hit
GGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGG10.6172839506172839No Hit
GAGTGCATGTCTCTATGGAAATAGGGATAAGTTGCTTAATGGGTAAGGGG10.6172839506172839No Hit
GTTGGCGAGCATCCCGAGGCCGCTGACACTGTGGGTATCTCGGTTGCTGG10.6172839506172839No Hit
CCTGGTAGATGTCCAGAATGTCTGTTTCCAGGAAAAGGTCACCTGCAAGA10.6172839506172839No Hit
GTCCTTTTATGTTCAAATCAAGACAAAGATTTTTCTTGAGGTCTCAGGAG10.6172839506172839No Hit
GAGCAGACTCCAGAGAAATTGCAACAACTTAAAGTCTTTCAGATCTGGCC10.6172839506172839No Hit
TTCGAAGACCATTCATTGCACCTGTCGTTGAGGGGGTCATCGATTCATCT10.6172839506172839No Hit
TCCCGAAATCCTCGGCGCGGACCATGACCTCGCGGGCGCGGGGCTCACGC10.6172839506172839No Hit
TTCCCGTGTTGTGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCC10.6172839506172839No Hit
CCACCGATGCGGGCGCCTCTGCGGAGATCCTGGACGACGGCGCGGCCGGC10.6172839506172839No Hit
AGGCGATTCCATGAAGCAGCTAAAGCGGGTGGAGAAATGAGCAGGGAAGG10.6172839506172839No Hit
GATAGACTGTGCACATGGAATCGGTTATACTCGGGCAGAGAAAGAGTGCA10.6172839506172839No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.6172839506172839Clontech Universal Primer Mix Long (96% over 26bp)
GTCAGCAACCTGGATCTGCACCTTTCCTATTACTTTGTTAGCCTAGAAAA10.6172839506172839No Hit
GTCGTTGCCGGAATCGCCATCATCGTCGGGTTCCTGAGCTGGGCCGCTGC10.6172839506172839No Hit
GGATAAGCTGATAAAGGAAGGAAAGTACACCCCTCCACCTCACCACATTG10.6172839506172839No Hit
CAACTCAGCATGGCCTTCGCCGAACGCCACGTGGCCAAGCGCTACGTGGC10.6172839506172839No Hit
CCCTCGGATGGCCTTGCGCATCATGGTGTTCTTGCCCATCAGCACCACAG10.6172839506172839No Hit
CTGCAGAATCATGAGCCAACTGAACCTCTTTTCTTTATAAATTACCCAGT10.6172839506172839No Hit
AGCTAAGTATGAGTACACAAAGGCATACAGAGTGGTATCATGGACGTTAG10.6172839506172839No Hit
GTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAAT10.6172839506172839No Hit
TGGTGAAACCCCGTTTCTACTAAAAATACACAAAATTAGCTGGGCATAGT10.6172839506172839No Hit
TCCTTGGTGAACACAAAGCCCACATTCCCCCGGATATGAGGCAGCAGTTT10.6172839506172839No Hit
CATCTGCAAGCTTCTGCCACACCTGAACCCACGGCCTGGCACCAACGCTA10.6172839506172839No Hit
GTATCAACGCAGAGTACATGGGAGTCGTTCTGAAGCGGCGGCCAGAGAAG10.6172839506172839No Hit
GCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGT10.6172839506172839No Hit
CCTCCTTGGTGAACACAAAGCCCACATTCCCCCGGATATGAGGCAGCAGT10.6172839506172839No Hit
CGTAGGGCGTGCCGACCCCGGCGGCGCGCAGCATCCACCACGCGCGCGCC10.6172839506172839No Hit
GCCGTGGAGCGGCTGCGCCGGTTCGCGGCAGACCTCGGCCGGGGCGGTTC10.6172839506172839No Hit
AACCGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGATTCTG10.6172839506172839No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA10.6172839506172839No Hit
ACATGGCAATTCTAAGATAATTAAAAACCTGTTTACACCTGCCCATTATG10.6172839506172839No Hit
GACTGTTCAACCCTACTTTCTACCACTCTCTCTCTTGCTCACTATCCTCT10.6172839506172839No Hit
CTTTGGCATAAGGATTATTTTGAGCCGAAGGCAACTGAGAAGTGGATACA10.6172839506172839No Hit
AATCCGCGGTTCTCAGTCGGGGCGTAGCGCAGCCTGGTAGCGCGTCTGCT10.6172839506172839No Hit
AAGCAAACACTCTACGAAATCATCATATTCTATCTTGCACTCTTTCTCTG10.6172839506172839No Hit
GAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAATTAGCCAGCTGTGGTG10.6172839506172839No Hit
CACTACCTCATGTGGGGTCTCTCCTCCGATTTCTGGGGAGAGAAGCCCAA10.6172839506172839No Hit
GGATGATTCTTGTCGGGGCGTGGAATCCCGCGCTGATCGCCGATTTCGAC10.6172839506172839No Hit

[WARN]Adapter Content

Adapter graph