FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003653943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003653943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGCGGGCTTCAAGCTCTATTCCGACAAGATCGCCGCGCCCGGCGATG220.0No Hit
ATTGGAATGGGCGGCAAGGAAGTCCCGGATAGCCGCGTTATCCTCTTCGG110.0No Hit
TGTCGGTGCCGCGCCTGTCACGCTGGAAGCCTATGTTGAATCCGTTCAAC110.0No Hit
CCAATGCAGACATTGCCTAACCAACACACCAGTCGATTTACAACAACCGG110.0No Hit
GCTGTCGCGCTCGATGTCAAAACGCACGGTGCCGGCAATCGCGTAGGCCA110.0No Hit
GGTCTGATGTGTCCACTGTGCGCTTTGAGCTGAGGGATTGGTCACATGCG110.0No Hit
GAAAAAAATAAGCAGGGTTTAGGGCACTAGTGCGGAGAAATATGTCTTCA110.0No Hit
CTGGCCATTTCGCCAAAATTTCTCGGTACAGACTTGCATGCAGTCCAAAT110.0No Hit
CAACTGTATACCTACAACCTTGGCTCATTATCAAGCAGTAATAAGCGGGT110.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)