FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003653946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003653946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTGGCTGTGCAAGTGCACGGTGACGCGGCCTTCGCCGGCCAGGGCGT218.181818181818183No Hit
CTTCCCACTAAGAGAATCCTTATGAAATCCGTTTTTACGATTTCCGCCAG218.181818181818183No Hit
TCTCAGCTCTCTGTTTCTTTTCGCTGTGCAGCTTTTCGGGCAATGGGTCT19.090909090909092No Hit
GGTATGCTCTCCCCGGTCCGCCTGGAGCCCCATTGATGAACACCGCTGAA19.090909090909092No Hit
GTGCGGCCATGTTCGGCGCGCGCCCGGCTGAGCAGGCGGTTGGCCAGCTG19.090909090909092No Hit
CCTGCGGGGCGTGGCAGCAATCCGACAACAGCCTGGCACGTCGCATCGAG19.090909090909092No Hit
CTTCCCACTAAGAGAATCCTTATGAAATCCGTTTGTACGATTTCCGCCAG19.090909090909092No Hit
GCGTATTGCGCAACATGGCCGGCCCGTCCAACCCGCACGCGCGTGTGGCA19.090909090909092No Hit
GTTGAATGACCTTGAGGGGAAGTGCTCGGTTAAGTATCTCTGAGATCGCT19.090909090909092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)