FastQCFastQC Report
Wed 8 May 2024
EGAF00003653972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003653972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences758516
Total Bases75.8 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG7930.10454624556370598No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT7910.10428257281323004No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT7720.10177768168370871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)