FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003654209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATCGTGGATGGCGCGTTCGAAGAGCTGGGCATGAACGACGACGGCTC210.0No Hit
CGTACCGGGTGGGCAGCCCACAGATCCGTGGCCAGTGGGACAAGACTGGG210.0No Hit
TTCCGAGACGGAGCAGCAGACCCGGCGATTGGCGTCAAGTCTCTGAATTA210.0No Hit
CCAGTTCGTCGTCGCCCTTCAGGTTGATGGCGACAAGTCCACCGGTGCGG210.0No Hit
ACAACAACAAGGTTCGTAAGATACTTTTCGATCCTCAAGTGAAAGCACCA15.0No Hit
GGCCGTGGCATCGCCCGCGCCGACCTTGCGGCGCGCGTGGTCCATGATGA15.0No Hit
GACTCGCGCAGGCGCCACAGCCAGGCGACCATCAGCAGGGCCAGGATGCC15.0No Hit
GACGGGATGAAGGCGTCCGCGAAGGTACTATCCCGAGGCGTAGATGAGAC15.0No Hit
GCGCCCGTCCGGACAGGCCGCACCGCAGGCCGATCGCAACGTTGCGCGCT15.0No Hit
TGCTAAAAGGGCTTAAGCCTGGCACCAACCTGGTCGAGGCGTTAACACAG15.0No Hit
GACTGTCTTGTGAGCCAGTTGAAGCAGTATGAGGGGCTCACCGTCAACAC15.0No Hit
CCATGTACCAGGCCTTTGTCGAGTTCAAGCGCGACGAATGGAACGCCTAC15.0No Hit
ATTATTGGCACTATTGGTGTCCTGAACGATGTCACAATTAGCCAAGCAGC15.0No Hit
TTATCGGCTTCTTCACCACTGAAACACATACGGTAAACGACAGTGTGTCC15.0No Hit
GGGGGCGACCGTGAGCTCCATTCTCCGGTTGCCGCTCAGCCGCTGCTCGC15.0No Hit
GAATGTCGCTGTAGGAGTTGACCAAGGCGAAAAGAGCCAAGCCCACCACC15.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)