FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003654297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3165
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT120.37914691943127965No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA70.22116903633491314No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA70.22116903633491314No Hit
GTACATGGGTCTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCC70.22116903633491314No Hit
GTCCAGGAGGCTTTGGAACAGGGCTCCTCGGGGTTTTCTTGCCAACTGTC70.22116903633491314No Hit
ATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGA60.18957345971563982No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.18957345971563982No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA50.1579778830963665No Hit
CCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACAGAATTAT50.1579778830963665No Hit
GTCCTTGACTCGTCCATGGAGCTGAGGGTCGGAGGAACCTTCCTTGGGGG50.1579778830963665No Hit
TACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGC50.1579778830963665No Hit
GTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGAA50.1579778830963665No Hit
ATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTG50.1579778830963665No Hit
GTACATGGGTCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTA50.1579778830963665No Hit
ACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACACAATAG50.1579778830963665No Hit
GTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCC50.1579778830963665No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT50.1579778830963665No Hit
TCCTCCTGCAGCAGCAGCAGCAGCAGATGGCAATGCCCAGGAGGAGGGTT50.1579778830963665No Hit
AATCTCCACTGGTGCCTATAGGCTTAGGAGGCTGCTTGGTGGTAGCAGCA40.1263823064770932No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT40.1263823064770932No Hit
CATCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCC40.1263823064770932No Hit
GTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGCCGATCCATCA40.1263823064770932No Hit
TCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGA40.1263823064770932No Hit
GTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGGTTATAGCTTTTCAGTCT40.1263823064770932No Hit
GTACATGGGACGGCCATCTGCCCAGTCCTTGACTCGTCCATGGAGCTGAG40.1263823064770932No Hit
CTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGAT40.1263823064770932No Hit
ATCAACGCAGAGTACATGGGCATAGCGAGCAGTGGAAGTATAAAAGGAAG40.1263823064770932No Hit
GTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTG40.1263823064770932No Hit
ACAGGAAGCTTTATTCATCCGCTGCTGGTCCAAAGAGTGGGTCGCAGGGT40.1263823064770932No Hit
CTCTTAATCTTCTCCTCAGCTCTTCTGCTGAAGAATTTGGCCTTCACGAT40.1263823064770932No Hit
CAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTC40.1263823064770932No Hit
GTCCAGTTGCTCCCAGTGACTGCAGAGTAGCCACAAGGCTGCCCGAGGCA40.1263823064770932No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA40.1263823064770932No Hit
TGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGGTTATAGCTTTTCAGTC40.1263823064770932No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG40.1263823064770932No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA40.1263823064770932No Hit
CTTTATTGAGGCTCCAGGGCCACGGGGCCTGGGCAGGAGGCTGCCCTTCA40.1263823064770932No Hit
GCGAGGAATGGAAGTTGGAGTACGTGGGATACAGGTCATGGGCAGAGCTC40.1263823064770932No Hit
CCCCTTTGCAGATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAG40.1263823064770932No Hit
GAATATAGCAAACGGTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTT40.1263823064770932No Hit
GTACATGGGAACCGGATCGGTGACTGTGGAGGGCGAGCTGAGCCCTGGCC40.1263823064770932No Hit
CATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGG40.1263823064770932No Hit
GTATCAACGCAGAGTACATGGGGCGGTGCGGAGGTCAGGGACAAGATGGT40.1263823064770932No Hit
AGTCTGAAGAATCCGGCGATGAAGAAGGGAAGAAACACAGCAGTGGCTCC40.1263823064770932No Hit
GTAGTATATAGCAGGCTGCCAGCGACTCCTGCTCTTGCTTCTGGATCTGC40.1263823064770932No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG40.1263823064770932No Hit
TTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTA40.1263823064770932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)