FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003654298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3165
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220.6951026856240127No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160.5055292259083728No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA120.37914691943127965No Hit
ATTTAAAGGAGCATCTCAGTTACGTGTGGCGGACAAAAAAAAGGAGCAGA100.315955766192733No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG90.2843601895734597No Hit
GTCCAGGAGGCTTTGGAACAGGGCTCCTCGGGGTTTTCTTGCCAACTGTC90.2843601895734597No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG80.2527646129541864No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA70.22116903633491314No Hit
GTACATGGGGTGCAGCGTGCCGGTGGCCTTGCGTGCGGCATGGCGCAGGA70.22116903633491314No Hit
ATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTGAAGTA70.22116903633491314No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG70.22116903633491314No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.22116903633491314No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG60.18957345971563982No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG60.18957345971563982No Hit
GGATTATACAGTTCATCATCTTGTTCTGGTACTTCAGTTAAAATATCATC50.1579778830963665No Hit
GGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGTATTA50.1579778830963665No Hit
GAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCG50.1579778830963665No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA50.1579778830963665No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT50.1579778830963665No Hit
GAACAACCTTATTTGACCTTCTTCTTGGGACGCAGGTTGTTGGTGTGACC50.1579778830963665No Hit
GTACATGGGAGATTCCGGAAAGGGGAAGAGCAGCCAACATGGCGGCGGAA50.1579778830963665No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.1579778830963665No Hit
GTATCAACGCAGAGTACATGGGTCAACAAAACTGCTCGCCAGAACACTAC50.1579778830963665No Hit
ATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTCCAGA50.1579778830963665No Hit
TCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACCTACGCACACGA50.1579778830963665No Hit
TCAACGCAGAGTACATGGGAACAACCGAAACCAAATAATTCAAGCACTGC50.1579778830963665No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.1579778830963665No Hit
GCGCAGGATGGCTTCGGTGGCGTCCATAAGGTCGCGGTGCGTCCAGTAGG50.1579778830963665No Hit
ATCATGGACACCAGCCGTGTGCAGCCTATCAAGCTGGCCAGGGTCACCAA50.1579778830963665No Hit
GTCCACTTCCGGCGCCGCGGCTGTTCCGGGCGGAGACCGCTTGTGCTGGA50.1579778830963665No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG50.1579778830963665No Hit
GTGACAGACCATTCCCATCGGCCAAGTGGTCGAACCCGACATCCAAGACC50.1579778830963665No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.1579778830963665No Hit
GTTGATATAGTGACGACCTCAGGAGCAACAGGTGGGTTAAAAACCCGTGG40.1263823064770932No Hit
CTCTGTGCTTGTGCCTTCAACACTTTCACAACGATTTTCTGCTCCTCGAT40.1263823064770932No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT40.1263823064770932No Hit
GTCTGAGCCCGGGAACAAGCACGGGCCCCCTTCCTCCTTCAGCTCCTGCC40.1263823064770932No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG40.1263823064770932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.1263823064770932No Hit
GTCCCGCTGCGTGTTTTCCTCTTGATCGGGAACTCCTGCTTCTCCTTGCC40.1263823064770932No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT40.1263823064770932No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC40.1263823064770932No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT40.1263823064770932No Hit
GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG40.1263823064770932No Hit
GTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGAA40.1263823064770932No Hit
CTCTGATACTGTCTTTCTGAGGCTTTTCTACGGTAGACATCATAGAAGGT40.1263823064770932No Hit
GGGTAAAACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGA40.1263823064770932No Hit
TCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATT40.1263823064770932No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG40.1263823064770932No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG40.1263823064770932No Hit
CGTGCAACCTGTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCC40.1263823064770932No Hit
ATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGTACAT40.1263823064770932No Hit
GGCCTCCAGCTATGGGGTCCAGGGTCTGAACCTCAGGGCCTGGCAGCTTC40.1263823064770932No Hit
TTATTAACTCATACAGTTACTTGTCTTCTGGTTTGTTGAAACAGTAAGTC40.1263823064770932No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTT40.1263823064770932No Hit
ACCTTACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCT40.1263823064770932No Hit
GTGCGGAGGTCAGGGACAAGATGGTGCCACCGGTGCAGGTCTCTCCGCTC40.1263823064770932No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT40.1263823064770932No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA40.1263823064770932No Hit
CTATAGGAGTCCTACTTCTCTCCAGCATCCTGTGCCATCCTCTTGACGTA40.1263823064770932No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAA40.1263823064770932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)