FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003654299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3186
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160.5021971123666039No Hit
ACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGG90.2824858757062147No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA80.25109855618330196No Hit
GTACATGGGTCTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCC80.25109855618330196No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA70.2197112366603892No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA70.2197112366603892No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG70.2197112366603892No Hit
CGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGAGTCACGGG70.2197112366603892No Hit
ATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATT60.18832391713747645No Hit
GCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAGGAGGGTGA60.18832391713747645No Hit
GTCTAAGGGCGGTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGAT50.15693659761456372No Hit
TGTCTCCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAG50.15693659761456372No Hit
GAGCTGTGGGAAGTGTGGGTTTGTCTCCAGAACAGAAGAGAATGATGGAT50.15693659761456372No Hit
GTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGCCGATCCATCA50.15693659761456372No Hit
TCCGTATACCAAGACGTCTAAGGGCGGTGTACACCCTTTTGAGCAATGAT50.15693659761456372No Hit
TCGTTACCCACCACAACGCGCTGGACCAGGAGATGTTCCTGCGCATCGCG50.15693659761456372No Hit
ACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCTGCGCCG50.15693659761456372No Hit
GTATATAGCAGGCTGCCAGCGACTCCTGCTCTTGCTTCTGGATCTGCAGG50.15693659761456372No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA50.15693659761456372No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.15693659761456372No Hit
GAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCAT40.12554927809165098No Hit
GAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGG40.12554927809165098No Hit
GACTTGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGGTTATAGCTTTTC40.12554927809165098No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG40.12554927809165098No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA40.12554927809165098No Hit
GATTGTGACAGACCATTCCCATCGGCCAAGTGGTCGAACCCGACATCCAA40.12554927809165098No Hit
GTGTGGCAAGATTTAATTGCAACGGCATCTGAAAATGGTGTGTGGCGTCG40.12554927809165098No Hit
ACGCTTGAGGAAGTAAAAGAAGCGGATTTAATTCTGCATTTAATTGATTC40.12554927809165098No Hit
ACATTCATCAGGAGGGCACTCTCGACGAAGGCGACTAATTTTGCCATTCT40.12554927809165098No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC40.12554927809165098No Hit
GTATCAACGCAGAGTACATGGGAACAACCGAAACCAAATAATTCAAGCAC40.12554927809165098No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT40.12554927809165098No Hit
GCTGTCGAGTTGTACGGCCGTTCAGCCACGAGTCACGGGGTCTAACGCCT40.12554927809165098No Hit
ATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCA40.12554927809165098No Hit
CTCAGGGACAGTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGC40.12554927809165098No Hit
GTCTGTGGCATGACAGGAAATGCAGGGGTGCACATGTTGGGGCTGCCCTT40.12554927809165098No Hit
GTCCAGGAGGCTTTGGAACAGGGCTCCTCGGGGTTTTCTTGCCAACTGTC40.12554927809165098No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG40.12554927809165098No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT40.12554927809165098No Hit
TCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGC40.12554927809165098No Hit
ACCTGCGATCACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGG40.12554927809165098No Hit
GTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCC40.12554927809165098No Hit
ATCATGGACACCAGCCGTGTGCAGCCTATCAAGCTGGCCAGGGTCACCAA40.12554927809165098No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG40.12554927809165098No Hit
ATTTAAAGGAGCATCTCAGTTACGTGTGGCGGACAAAAAAAAGGAGCAGA40.12554927809165098No Hit
GGCTATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAATACTTCAG40.12554927809165098No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.12554927809165098No Hit
ACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA40.12554927809165098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)