FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003654300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3186
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT250.7846829880728187No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT170.5335844318895167No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA160.5021971123666039No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT140.4394224733207784No Hit
ATTTAAAGGAGCATCTCAGTTACGTGTGGCGGACAAAAAAAAGGAGCAGA90.2824858757062147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.25109855618330196No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG80.25109855618330196No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG80.25109855618330196No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG70.2197112366603892No Hit
GTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGCCGATCCATCA70.2197112366603892No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG70.2197112366603892No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG60.18832391713747645No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT60.18832391713747645No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA60.18832391713747645No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC50.15693659761456372No Hit
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG50.15693659761456372No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA50.15693659761456372No Hit
GTACATGGGAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAAT50.15693659761456372No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA50.15693659761456372No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA40.12554927809165098No Hit
TGATTGCACAACCTGCGATCACCTTATACAGAATTATCAATCAAGCTCCC40.12554927809165098No Hit
ACCTTGGGTTGGGGTCACAACCTCCCGGTCATGTTCTTTCTTCCCCTGCA40.12554927809165098No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA40.12554927809165098No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT40.12554927809165098No Hit
TTCTTGGACGGTCCAGGAGGCTTTGGAACAGGGCTCCTCGGGGTTTTCTT40.12554927809165098No Hit
TCTCAGAGGTGATCGGCGATCAGAGGGCGATGAAGTTCTAGATCCATTGA40.12554927809165098No Hit
CACTTATCCTGGGCTTCATCCAATGGTGGGTGCTAACTCTTTAATAGCCT40.12554927809165098No Hit
TTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAGTCAACCAGGTGT40.12554927809165098No Hit
GTACATGGGACGGCCATCTGCCCAGTCCTTGACTCGTCCATGGAGCTGAG40.12554927809165098No Hit
GAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCG40.12554927809165098No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT40.12554927809165098No Hit
GTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTTCTGTAAGCCTTG40.12554927809165098No Hit
ACGCAGAGTACATGGGCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCA40.12554927809165098No Hit
GTATCAACGCAGAGTACATGGGAGATTCCGGAAAGGGGAAGAGCAGCCAA40.12554927809165098No Hit
ATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTG40.12554927809165098No Hit
CTCAGGGACAGTGCACGCAGGTGCGCGTGGAATTCATGGACGACACGAGC40.12554927809165098No Hit
GTATCAACGCAGAGTACATGGGGCTCTCCGCCAGACCGCCGCCGCGCCGC40.12554927809165098No Hit
GGGTAAAACGCAAGCACCGGCTGTCGAGTTGTACGGCCGTTCAGCCACGA40.12554927809165098No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG40.12554927809165098No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG40.12554927809165098No Hit
ACCTGCGATCACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGG40.12554927809165098No Hit
CCCCTGGCATGGTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAG40.12554927809165098No Hit
GGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG40.12554927809165098No Hit
CCGTTACCGGATCTGCGTGGGGCTGGTGGTGGTTGGTGTCCTGCTCATCA40.12554927809165098No Hit
GTACATGGGCACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAA40.12554927809165098No Hit
GTCCAGGGCAGAGGACCAACATGGGCATTTTGTTTATGAGCAAGGTGGGT40.12554927809165098No Hit
GGGAAGGGGTAACCCCCTCACCCCCGGGAGTGGCCCAGGGGGAGAGAGGC40.12554927809165098No Hit
CTCCAGCTATGGGGTCCAGGGTCTGAACCTCAGGGCCTGGCAGCTTCAGG40.12554927809165098No Hit
ACCTTACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCT40.12554927809165098No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA40.12554927809165098No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA40.12554927809165098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)