FastQCFastQC Report
Tue 10 May 2022
EGAF00003654301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83232
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG3070.3688485198000769No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2230.2679257977700884No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT1430.1718089196462899No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT1220.14657823913879278No Hit
CCTCCCTACCGCTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGAT1170.14057093425605538No Hit
CCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACCGCTCCAAGCC1160.13936947327950788No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA1140.13696655132641292No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT1130.13576509034986542No Hit
CCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGC1120.13456362937331795No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT1120.13456362937331795No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA1100.13216070742022298No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT1050.12615340253748558No Hit
CCACTGGATTTGACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCC1020.12254901960784313No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1010.12134755863129566No Hit
GTACATGGGATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC1000.12014609765474817No Hit
CTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGG980.11774317570165321No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC940.11293733179546328No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG930.11173587081891581No Hit
GACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTC920.11053440984236831No Hit
CATTATTTCATAGAAAAAGGAATATAGCAAACGGTCACGGTCAGGGTTGT880.1057285659361784No Hit
CCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGCTT880.1057285659361784No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT870.1045271049596309No Hit
GATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTC840.10092272202998846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)