FastQCFastQC Report
Tue 10 May 2022
EGAF00003654303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85028
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTATTATCATTCACATTATTTCATAGAAAAAGGAATATAGCAAACGG3110.36576186667921157No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2470.29049254363268573No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT1690.19875805616973233No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA1340.1575951451286635No Hit
CCTCCCTACCGCTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGAT1270.14936256292044972No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA1260.14818647974784777No Hit
CCACTGGATTTGACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCC1230.14465823023004187No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT1180.13877781436703204No Hit
CCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTCAGCCCTTGAGGGC1160.1364256480218281No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1100.1293691489862163No Hit
CCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTACCGCTCCAAGCC1080.12701698264101238No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT1070.1258408994684104No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC1070.1258408994684104No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT1050.12348873312320649No Hit
GTACATGGGATCCCCTCGACCGCTCGCGTCGCATTTGGCCGCCTCCCTAC1020.11996048360540057No Hit
CTCCAAGCCCAGCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGG960.11290398456978877No Hit
GATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTC960.11290398456978877No Hit
GCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGGCCATCTT940.11055181822458485No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT930.10937573505198288No Hit
GCCCTCAGCCATGGCATGCCCCCTGGATCAGGCCATTGGCCTCCTCGTGG910.10702356870677895No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT870.10231923601637108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)