FastQCFastQC Report
Tue 10 May 2022
EGAF00003654347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1607341
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGAACTGTACGCTGTACCTGCATCAGCATTAGTAATCAACCTGTTA51520.32052937117886No Hit
GTATGTAGGTAGCCACTGAAAGAATTTGGGCCCCTTGGGAGGATGGCAGT30280.18838566302981136No Hit
GACATATTCTGAGCCTACAGCAGAGGAACCTCCAGTCTCAGCACCATGAA16940.10539145084957081No Hit
GTACCTGCATCAGCATTAGTAATCAACCTGTTAATCCAAGGTCTTTAGAA16790.10445823257168206No Hit
ACATTATAGTGCCAGGGTAGAGTTATTACTGAATAGCTTAGGATGATGAA16100.10016542849339374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)