FastQCFastQC Report
Tue 10 May 2022
EGAF00003654493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003654493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1213722
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT17110.14097132621803016No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC14300.11781940180700358No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT12180.10035246951114012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)