FastQCFastQC Report
Tue 10 May 2022
EGAF00003655093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences634400
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT13160.20744010088272385No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC8520.1343001261034048No Hit
GTACATGGGATGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAAT8500.13398486759142497No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA8190.1290983606557377No Hit
CACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCAC8120.12799495586380832No Hit
ATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAA7700.12137452711223204No Hit
TGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAGATGAATC7510.1183795712484237No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC7290.11491172761664566No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT7270.11459646910466582No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT7000.11034047919293823No Hit
ACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATAC6810.10734552332912989No Hit
GTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATT6800.10718789407313997No Hit
GTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCC6770.10671500630517024No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC6530.10293190416141235No Hit
CCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACC6440.10151324085750316No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG6350.10009457755359395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)