FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003655125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003655125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGATCAGGCTGTTGTGCTGCCTTCCCTTTGAGCCTGGTGCTTCAGATTG53.937007874015748No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA43.149606299212598Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGGTCTGATGATAGCAGTCCTGCCACCTTCTAGTTCATCCCATAGGAAT32.3622047244094486No Hit
GCCTTTTTGGGCTACAGAATGCCGTATTTATATGACAGGTGCACGGGCCG32.3622047244094486No Hit
GGAGATGATGGAGAATTGCTGTATTTCTGTTTGCCATGGCTAGTTGATTC21.574803149606299No Hit
AATGTGGAAACAGTAGAATATAAGAACATTTGTTTCACAGTATGGGATGT21.574803149606299No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG21.574803149606299Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGTCAGTGCCAGCTTGAACTGCACCTGCACCTCGTCGGCCACCATGGAGG21.574803149606299No Hit
GTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGG21.574803149606299No Hit
CTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATT21.574803149606299No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.574803149606299Clontech Universal Primer Mix Long (96% over 26bp)
ATGTCATATTACTAAAAAGATGAGAGGCTAATTTGTGCCGACTTTTTGCT21.574803149606299No Hit
ATCCTGAATGGAGAAAACCCAACTTTTTTAAAAAAGAAGGAAGTGTATGA21.574803149606299No Hit
GTGAAGGATATATTGGAAAAGAAAGAGGCAATGAAATAACTTAGGAGGCC21.574803149606299No Hit
GTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTAATCACCTACA21.574803149606299No Hit
GTATAGCGATGCTCAGGAGAAGAAATTTTAAAGATTGAGTGGTTTCAGAG21.574803149606299No Hit
GGGTGGTTGTCATAGTCTTCAGTGAGGAGATAGTCTTCTGTGATGTGGGG21.574803149606299No Hit
AGGCTGTTCACCTTGACCTGCTGCGGATATGGGTACGGCCCGGCGCGAGA21.574803149606299No Hit
GTTGATGTTTGGGGATAATTGTTTTTGGGGGGAGTGGGCCACCTTGTGCA21.574803149606299No Hit
CCATTATGCCTTCCGCATCTTTGACTTTGATGATGACGGAACCTTGAACA21.574803149606299No Hit
GGCTGCTTCAGAGACCATGCAGTCTTTTCTGGAGAGTCTTCTATTGGGTC21.574803149606299No Hit
CACCATTACTTTTTTTAAAGTCACAATTTCAGAATTTTGGGACATTTGCA21.574803149606299No Hit
TGGTATTATTTCCAACCTTCGTGTCTGTGTTGGTCTCATTGTGATAGCTG10.7874015748031495No Hit
GGCCAATGTAGTTAGTGCGGATGGCAGGGCTGGAACCATTCACCACGTTG10.7874015748031495No Hit
CGCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAAC10.7874015748031495No Hit
ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATC10.7874015748031495No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATCGGCGTTTTAAC10.7874015748031495No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCAAGTACCTGTCTCTTATAC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
GGACATACAATTGAATAAAAAGAGTTTAGGAACTGGTTTCTGCTTTAATA10.7874015748031495No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC10.7874015748031495No Hit
CCTGTAATCTCAGCACTTTGGGAGGACAAGACGGGTGGATCACCTGAGGT10.7874015748031495No Hit
CTCGTGGCCCGCACGCAGCCCTCTCCCTGGCAGATGATGCTTCAGGACTT10.7874015748031495No Hit
GTGAGCATCGGTAGCTGGTTTGGGGTCAAACAAGGGGGGTAAACTGTCTA10.7874015748031495No Hit
GGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAAAC10.7874015748031495No Hit
GGTTCAGACATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAG10.7874015748031495No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
GTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGA10.7874015748031495No Hit
GATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGA10.7874015748031495No Hit
GTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAACCTG10.7874015748031495No Hit
TCTGCTCCCACCACTCCACGGACCCTGCTCTTGCCAAAGTTAACAGTGGC10.7874015748031495No Hit
CCATTCTATCCGAGTCCATTCCATTCCATTCAAGTCCATTCCATTCCATT10.7874015748031495No Hit
ACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGTTTA10.7874015748031495No Hit
CTCAAAAACTGTAAGACATATTAAGAGAAGATATCATTGAGTGGAAGGAT10.7874015748031495No Hit
TCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCC10.7874015748031495No Hit
GCCGATGGCAAGACGACCGTCAAGATCGGCACGACTGAGGCAGCCAACGA10.7874015748031495No Hit
ATATTTCTGTGTATGTGACCTTAACAGGAAAAGCATAAAATCAAGCTGGT10.7874015748031495No Hit
GATAGCAGGTGATAGTTCTGCAAGAGCGTGTCAAATTGGAGCTTATCTCT10.7874015748031495No Hit
TCTTAAGCCAGTGATCTTCTCTACAGAATGCTATACCAGTTGGATTCACA10.7874015748031495No Hit
GTGCATTGTAGGCCAGGAATATTGTGCAATGCTAGAAAAAAAAGGCAACA10.7874015748031495No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACACTGCGTTGATACCACTG10.7874015748031495Clontech SMART CDS Primer II A (95% over 23bp)
GATATGAGATAAGCTGAAGAGGAAGGCAGGAGCCAGATCACATGTTAGGG10.7874015748031495No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
TACTTTAACTTTATGTAGAGCTGGAATGGATTTAGGGAATGGTGTGAAAT10.7874015748031495No Hit
CCTGGTTGCTGTCAGGCTGGAAGCCAGCACACGCAGCTATGGTTTCTCTA10.7874015748031495No Hit
CCAGTGCCTGGGGCAGGCAGGGCTGTGCACTCCAAGGGACGTAACCACTA10.7874015748031495No Hit
ATATACATATCAATCAGGGCTTTCTCCTTTATGTCTTTCCCATAGAGGTT10.7874015748031495No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
AAAAATACAATAGCCAGGTGTGGTGGCACACATCTGTAATCCCAGCTACT10.7874015748031495No Hit
CTTTCTCCCATGCTGGATGCTTCCTGCCCTTGAACATCAGACCCCAAGTT10.7874015748031495No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCTCTTATAC10.7874015748031495Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACTTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGTACTCT10.7874015748031495Clontech Universal Primer Mix Long (95% over 21bp)
ACAAGAAATGGTAAGTTCTCTAGATGCTTTAGAGAGACATATGTGCCTCC10.7874015748031495No Hit
GTACAGCTATTGCTGAGTGTGATGGAATGTACAAACGGAGGTCGAGGTAG10.7874015748031495No Hit
ATTCCATTCTATTAGATGATTCCATTCGGGTCCATTCGATGATTCTCTTC10.7874015748031495No Hit
GTCGGCGCGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAATCC10.7874015748031495No Hit
GCTAGATTTCTCAGAATTTCTTAATCTGATTGGTGGCCTAGCTATGGCTT10.7874015748031495No Hit
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCCTTTAT10.7874015748031495No Hit
CAGGTCGAGTGGGGGCTCCACTGACCTTTGCCCGGGCCCAAGGCCTGCAG10.7874015748031495No Hit
GTCGTAGGGCGAGAGCTCGAGCGAGACCTTGTCGCCGGCCAGGATGCGGA10.7874015748031495No Hit
GTTCCTGCCTTGAGTTTTTTTGTCGTTGCAAGCCACGGGGTTGCTATGCA10.7874015748031495No Hit
AGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAA10.7874015748031495No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTAAACC10.7874015748031495No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGGGTTGATAC10.7874015748031495No Hit
AGCTCTTTGTAACTTCTCTAAGAATTCACTTCGGCTTTCTATAAAGACAA10.7874015748031495No Hit
GCATGGTGGTGTGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAAG10.7874015748031495No Hit
CGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACAC10.7874015748031495No Hit
TCTTCCAACTGAATGACCTGGCCATCTATGAGTTTTGCATCTTTAGAATT10.7874015748031495No Hit
CTCCTATGTAGCGCAAAAACCCCAGGTGTTTCCCATGATAGAGATATTGT10.7874015748031495No Hit
CTTAAACTCTGACAGACGGTGAGCAATGCAGAACATATCCATATTTCTCT10.7874015748031495No Hit
CTATTGGAACTATATAAAAAATTCTGTCTGTTTGCCTTCAGTTTTTGAGA10.7874015748031495No Hit
AAGAACTAGTTTCACGCGTTTTCGAGGGCGTGAAGTGTGCGTCGCTGTCT10.7874015748031495No Hit
GGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGG10.7874015748031495No Hit
GCCTTGGGGCGCCTGCCTGTTGGGGCCCTGCCTGCCTCTCATTCAGCCGG10.7874015748031495No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA10.7874015748031495No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
ATCAAGCACAGCGGCGCGCGCGAGATCACGGTGCGCACGGCCCAGGCCCC10.7874015748031495No Hit
GCTAACAGAGCGTTAATGTGTGCCAGTTGTGCTTTAGCATGAGTAGCTGT10.7874015748031495No Hit
GTTGGAGCCATGGGTGACAACATGAATTGCCCCAGAATCCAGGAACTGGA10.7874015748031495No Hit
CTTCTTCAGGATAACTTAAAAAATTAAATGATGTATTGAACATACTACTA10.7874015748031495No Hit
GTTACATTTAAATCTACGAACAGTTAGGCCTCTCAGTACTAGAACGTCTC10.7874015748031495No Hit
CGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCC10.7874015748031495Clontech Universal Primer Mix Long (96% over 26bp)
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTT10.7874015748031495No Hit
GGACAGCATCATTGAGAATGTGAGATTAGTCAATGACTTGTGAAGGAGGT10.7874015748031495No Hit
GCATAAGGGAGCTGCAGCCAGCCCACAGAGCGAAGAGCCTGCCCCAGCTA10.7874015748031495No Hit
GGCTGCAGGAGTGCATTGAGCTCTTCACCACTGTGGAGACCCTGGAGAAG10.7874015748031495No Hit
GTTCATACCATTCATTATATGTTAGCTTTACTAATTCAATCCTCAGAAGG10.7874015748031495No Hit
ACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCA10.7874015748031495No Hit
GTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCA10.7874015748031495No Hit

[WARN]Adapter Content

Adapter graph